Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC26.01■■□□□ 1.752e-7■■■■□ 20.5
UPF1Q92900 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC22.6■■□□□ 1.212e-7■■■■□ 20.5
UPF1Q92900 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.832e-7■■■■□ 20.5
UPF1Q92900 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC18.54■□□□□ 0.562e-7■■■■□ 20.5
UPF1Q92900 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC25.73■■□□□ 1.719e-9■■■■□ 20.5
UPF1Q92900 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC24.48■■□□□ 1.519e-9■■■■□ 20.5
UPF1Q92900 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.029e-9■■■■□ 20.5
UPF1Q92900 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.129e-9■■■■□ 20.5
UPF1Q92900 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC26.82■■□□□ 1.882e-6■■■■□ 20.5
UPF1Q92900 PML-219ENST00000569161 675 ntTSL 324.94■■□□□ 1.582e-6■■■■□ 20.5
UPF1Q92900 PML-212ENST00000564725 4620 ntTSL 1 (best)14.85□□□□□ -0.032e-6■■■■□ 20.5
UPF1Q92900 PRR13-207ENST00000549581 838 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.443e-11■■■■□ 20.5
UPF1Q92900 PRR13-205ENST00000549068 755 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.663e-11■■■■□ 20.5
UPF1Q92900 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC22.5■■□□□ 1.195e-7■■■■□ 20.5
UPF1Q92900 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.42■■□□□ 1.022e-8■■■■□ 20.5
UPF1Q92900 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.232e-12■■■■□ 20.5
UPF1Q92900 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.06□□□□□ -0.162e-12■■■■□ 20.5
UPF1Q92900 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.172e-12■■■■□ 20.5
UPF1Q92900 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC13.19□□□□□ -0.32e-12■■■■□ 20.5
UPF1Q92900 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC12.74□□□□□ -0.372e-12■■■■□ 20.5
UPF1Q92900 ACIN1-222ENST00000557515 2751 ntTSL 5 BASIC12.41□□□□□ -0.422e-12■■■■□ 20.5
UPF1Q92900 ACIN1-206ENST00000473758 3540 ntTSL 1 (best)11.84□□□□□ -0.512e-12■■■■□ 20.5
UPF1Q92900 ACIN1-223ENST00000605057 4474 ntTSL 1 (best) BASIC11.37□□□□□ -0.592e-12■■■■□ 20.5
UPF1Q92900 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.736e-7■■■■□ 20.5
UPF1Q92900 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC19.43■□□□□ 0.78e-7■■■■□ 20.5
UPF1Q92900 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.081e-6■■■■□ 20.5
UPF1Q92900 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.236e-8■■■■□ 20.5
UPF1Q92900 HK2-202ENST00000409174 5278 ntTSL 1 (best) BASIC11.5□□□□□ -0.576e-8■■■■□ 20.5
UPF1Q92900 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC28.96■■■□□ 2.232e-9■■■■□ 20.5
UPF1Q92900 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.82e-9■■■■□ 20.5
UPF1Q92900 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC19.75■□□□□ 0.752e-9■■■■□ 20.5
UPF1Q92900 SCAMP5-205ENST00000562765 1206 ntTSL 229.37■■■□□ 2.291e-7■■■■□ 20.5
UPF1Q92900 SCAMP5-212ENST00000567529 966 ntTSL 216.84■□□□□ 0.291e-7■■■■□ 20.5
UPF1Q92900 PPP1R15A-202ENST00000600406 1725 nt17.09■□□□□ 0.334e-15■■■■□ 20.5
UPF1Q92900 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.354e-11■■■■□ 20.4
UPF1Q92900 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.062e-6■■■■□ 20.4
UPF1Q92900 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC11.08□□□□□ -0.647e-9■■■■□ 20.4
UPF1Q92900 ETV5-201ENST00000306376 4111 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.092e-7■■■■□ 20.4
UPF1Q92900 CENPO-203ENST00000395845 854 ntTSL 320.45■□□□□ 0.866e-8■■■■□ 20.4
UPF1Q92900 CENPO-204ENST00000464156 660 ntTSL 29.66□□□□□ -0.866e-8■■■■□ 20.4
UPF1Q92900 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.511e-9■■■■□ 20.4
UPF1Q92900 ORC6-204ENST00000566860 1699 ntTSL 2 BASIC15.85■□□□□ 0.131e-9■■■■□ 20.4
UPF1Q92900 ORC6-205ENST00000567000 1560 ntTSL 212.15□□□□□ -0.461e-9■■■■□ 20.4
UPF1Q92900 ALDH1A2-209ENST00000558384 466 ntTSL 39.99□□□□□ -0.811e-16■■■■□ 20.4
UPF1Q92900 ZDHHC7-202ENST00000344861 2727 ntTSL 1 (best)18.31■□□□□ 0.523e-13■■■■□ 20.4
UPF1Q92900 ZDHHC7-201ENST00000313732 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.143e-13■■■■□ 20.4
UPF1Q92900 TRUB2-201ENST00000372890 5719 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.531e-6■■■■□ 20.4
UPF1Q92900 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC37.04■■■■□ 3.525e-13■■■■□ 20.4
UPF1Q92900 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.415e-13■■■■□ 20.4
UPF1Q92900 AES-212ENST00000592414 3274 ntTSL 213.59□□□□□ -0.234e-12■■■■□ 20.4
UPF1Q92900 WWOX-218ENST00000627394 894 ntTSL 5 BASIC30.18■■■□□ 2.422e-6■■■■□ 20.4
UPF1Q92900 WWOX-215ENST00000569332 1856 ntTSL 228.35■■■□□ 2.132e-6■■■■□ 20.4
UPF1Q92900 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC25.07■■□□□ 1.62e-6■■■■□ 20.4
UPF1Q92900 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC24.59■■□□□ 1.532e-6■■■■□ 20.4
UPF1Q92900 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC23.98■■□□□ 1.432e-6■■■■□ 20.4
UPF1Q92900 WWOX-213ENST00000566662 571 ntTSL 422.56■■□□□ 1.22e-6■■■■□ 20.4
UPF1Q92900 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC22.48■■□□□ 1.192e-6■■■■□ 20.4
UPF1Q92900 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC21.74■■□□□ 1.072e-6■■■■□ 20.4
UPF1Q92900 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.812e-6■■■■□ 20.4
UPF1Q92900 WWOX-209ENST00000563358 724 ntTSL 319.44■□□□□ 0.72e-6■■■■□ 20.4
UPF1Q92900 WWOX-206ENST00000561846 769 ntTSL 318.78■□□□□ 0.62e-6■■■■□ 20.4
UPF1Q92900 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.342e-6■■■■□ 20.4
UPF1Q92900 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.783e-20■■■■□ 20.4
UPF1Q92900 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC28.91■■■□□ 2.226e-8■■■■□ 20.4
UPF1Q92900 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.856e-8■■■■□ 20.4
UPF1Q92900 RNF114-203ENST00000622999 2438 ntTSL 222.46■■□□□ 1.195e-8■■■■□ 20.4
UPF1Q92900 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.525e-8■■■■□ 20.4
UPF1Q92900 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC43.95■■■■■ 4.633e-7■■■■□ 20.4
UPF1Q92900 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.792e-22■■■■□ 20.4
UPF1Q92900 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.042e-22■■■■□ 20.4
UPF1Q92900 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.642e-22■■■■□ 20.4
UPF1Q92900 ZIM2-205ENST00000597281 2037 ntTSL 1 (best)13.91□□□□□ -0.182e-22■■■■□ 20.4
UPF1Q92900 ZIM2-203ENST00000595671 2054 ntTSL 1 (best)13.33□□□□□ -0.272e-22■■■■□ 20.4
UPF1Q92900 ZIM2-207ENST00000601070 1965 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.532e-22■■■■□ 20.4
UPF1Q92900 PEG3-201ENST00000326441 8723 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.972e-22■■■■□ 20.4
UPF1Q92900 SRGAP2-207ENST00000604010 884 ntTSL 517.92■□□□□ 0.461e-6■■■■□ 20.4
UPF1Q92900 SRGAP2-212ENST00000604925 1013 ntTSL 514.28□□□□□ -0.121e-6■■■■□ 20.4
UPF1Q92900 SRGAP2-209ENST00000604247 2499 nt13.46□□□□□ -0.261e-6■■■■□ 20.4
UPF1Q92900 SRGAP2-214ENST00000605476 2484 ntTSL 1 (best)11.37□□□□□ -0.591e-6■■■■□ 20.4
UPF1Q92900 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.099e-7■■■■□ 20.4
UPF1Q92900 DDB1-224ENST00000545894 2282 ntTSL 213.71□□□□□ -0.216e-17■■■■□ 20.4
UPF1Q92900 MED8-202ENST00000372455 1186 ntTSL 1 (best) BASIC14.32□□□□□ -0.124e-16■■■■□ 20.3
UPF1Q92900 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.011e-12■■■■□ 20.3
UPF1Q92900 BLMH-206ENST00000578795 2079 nt9.14□□□□□ -0.951e-12■■■■□ 20.3
UPF1Q92900 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC35.27■■■■□ 3.241e-7■■■■□ 20.3
UPF1Q92900 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.911e-7■■■■□ 20.3
UPF1Q92900 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.61e-7■■■■□ 20.3
UPF1Q92900 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC25.24■■□□□ 1.631e-7■■■■□ 20.3
UPF1Q92900 CES2-202ENST00000417689 3868 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.421e-7■■■■□ 20.3
UPF1Q92900 CES2-201ENST00000317091 3927 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.571e-7■■■■□ 20.3
UPF1Q92900 REPIN1-206ENST00000469309 910 ntTSL 236.06■■■■□ 3.363e-7■■■■□ 20.3
UPF1Q92900 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.15e-7■■■■□ 20.3
UPF1Q92900 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC13.31□□□□□ -0.285e-7■■■■□ 20.3
UPF1Q92900 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.06□□□□□ -0.325e-7■■■■□ 20.3
UPF1Q92900 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.325e-7■■■■□ 20.3
UPF1Q92900 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.345e-7■■■■□ 20.3
UPF1Q92900 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.81■□□□□ 0.761e-7■■■■□ 20.3
UPF1Q92900 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.021e-7■■■■□ 20.3
UPF1Q92900 STARD3-229ENST00000585269 1346 ntTSL 530.11■■■□□ 2.416e-7■■■■□ 20.3
UPF1Q92900 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC23.25■■□□□ 1.316e-7■■■■□ 20.3
Retrieved 100 of 15,879 protein–RNA pairs in 136.8 ms