Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 AC104417.2-201ENST00000562989 1793 ntBASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
CLHC1Q8NHS4 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 YBX1P10-201ENST00000444752 975 ntBASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 AC120498.8-201ENST00000614275 531 ntBASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CLHC1Q8NHS4 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
CLHC1Q8NHS4 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
CLHC1Q8NHS4 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.46■□□□□ 0.54
CLHC1Q8NHS4 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 KRT8P8-201ENST00000434750 1448 ntBASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms