Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 CD81-212ENST00000526072 1172 ntTSL 5 BASIC25.43■■□□□ 1.66
USHBP1Q8N6Y0 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC25.43■■□□□ 1.66
USHBP1Q8N6Y0 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC25.43■■□□□ 1.66
USHBP1Q8N6Y0 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
USHBP1Q8N6Y0 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
USHBP1Q8N6Y0 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
USHBP1Q8N6Y0 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
USHBP1Q8N6Y0 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
USHBP1Q8N6Y0 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
USHBP1Q8N6Y0 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
USHBP1Q8N6Y0 BUB3-202ENST00000368859 667 ntTSL 3 BASIC25.42■■□□□ 1.66
USHBP1Q8N6Y0 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
USHBP1Q8N6Y0 PTK2-216ENST00000519881 863 ntTSL 3 BASIC25.42■■□□□ 1.66
USHBP1Q8N6Y0 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC25.42■■□□□ 1.66
USHBP1Q8N6Y0 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC25.42■■□□□ 1.66
USHBP1Q8N6Y0 WDR88-203ENST00000592765 651 ntTSL 5 BASIC25.42■■□□□ 1.66
USHBP1Q8N6Y0 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
USHBP1Q8N6Y0 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 AC116407.4-201ENST00000623319 1061 ntBASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
USHBP1Q8N6Y0 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 SPDYE15P-201ENST00000424157 909 ntBASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 HYMAI.1-201ENST00000620949 238 ntBASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC25.4■■□□□ 1.66
USHBP1Q8N6Y0 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
USHBP1Q8N6Y0 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
USHBP1Q8N6Y0 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
USHBP1Q8N6Y0 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
USHBP1Q8N6Y0 USP39-204ENST00000409766 2033 ntTSL 2 BASIC25.39■■□□□ 1.66
USHBP1Q8N6Y0 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.66
USHBP1Q8N6Y0 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
USHBP1Q8N6Y0 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC25.39■■□□□ 1.66
USHBP1Q8N6Y0 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC25.39■■□□□ 1.66
USHBP1Q8N6Y0 FXN-203ENST00000396366 922 ntTSL 2 BASIC25.39■■□□□ 1.66
USHBP1Q8N6Y0 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC25.39■■□□□ 1.66
USHBP1Q8N6Y0 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
USHBP1Q8N6Y0 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.65
USHBP1Q8N6Y0 LINC01006-201ENST00000333319 2292 ntBASIC25.39■■□□□ 1.65
USHBP1Q8N6Y0 TCF3P1-201ENST00000423021 1937 ntBASIC25.39■■□□□ 1.65
USHBP1Q8N6Y0 SDHAP1-207ENST00000440850 2000 ntBASIC25.39■■□□□ 1.65
USHBP1Q8N6Y0 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
USHBP1Q8N6Y0 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC25.39■■□□□ 1.65
USHBP1Q8N6Y0 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
USHBP1Q8N6Y0 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 DUSP5P1-201ENST00000441325 1139 ntBASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
USHBP1Q8N6Y0 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC25.37■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms