Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VSX2P58304 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.44■□□□□ 0.54
VSX2P58304 RCC2P6-201ENST00000526625 1557 ntBASIC18.44■□□□□ 0.54
VSX2P58304 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VSX2P58304 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
VSX2P58304 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VSX2P58304 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VSX2P58304 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
VSX2P58304 MESTP1-201ENST00000404287 994 ntBASIC18.44■□□□□ 0.54
VSX2P58304 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.44■□□□□ 0.54
VSX2P58304 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.44■□□□□ 0.54
VSX2P58304 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.44■□□□□ 0.54
VSX2P58304 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.44■□□□□ 0.54
VSX2P58304 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.44■□□□□ 0.54
VSX2P58304 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.44■□□□□ 0.54
VSX2P58304 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.44■□□□□ 0.54
VSX2P58304 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VSX2P58304 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VSX2P58304 TREX1-205ENST00000625293 1783 ntBASIC18.44■□□□□ 0.54
VSX2P58304 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
VSX2P58304 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
VSX2P58304 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.44■□□□□ 0.54
VSX2P58304 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VSX2P58304 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.44■□□□□ 0.54
VSX2P58304 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
VSX2P58304 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
VSX2P58304 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.43■□□□□ 0.54
VSX2P58304 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.43■□□□□ 0.54
VSX2P58304 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VSX2P58304 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.43■□□□□ 0.54
VSX2P58304 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
VSX2P58304 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.43■□□□□ 0.54
VSX2P58304 UNC93B2-201ENST00000285383 730 ntBASIC18.43■□□□□ 0.54
VSX2P58304 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
VSX2P58304 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VSX2P58304 Z85996.1-201ENST00000494644 937 ntBASIC18.43■□□□□ 0.54
VSX2P58304 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.43■□□□□ 0.54
VSX2P58304 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
VSX2P58304 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VSX2P58304 AP000525.1-201ENST00000608286 694 ntBASIC18.43■□□□□ 0.54
VSX2P58304 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.43■□□□□ 0.54
VSX2P58304 AC011298.2-201ENST00000617989 482 ntBASIC18.43■□□□□ 0.54
VSX2P58304 ZNF815P-204ENST00000434898 1737 ntBASIC18.43■□□□□ 0.54
VSX2P58304 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.42■□□□□ 0.54
VSX2P58304 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.42■□□□□ 0.54
VSX2P58304 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VSX2P58304 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.42■□□□□ 0.54
VSX2P58304 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.42■□□□□ 0.54
VSX2P58304 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VSX2P58304 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VSX2P58304 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VSX2P58304 AC079598.2-202ENST00000546624 1451 ntBASIC18.42■□□□□ 0.54
VSX2P58304 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
VSX2P58304 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VSX2P58304 AC004951.3-201ENST00000418645 1148 ntBASIC18.42■□□□□ 0.54
VSX2P58304 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.42■□□□□ 0.54
VSX2P58304 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.42■□□□□ 0.54
VSX2P58304 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.42■□□□□ 0.54
VSX2P58304 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VSX2P58304 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.42■□□□□ 0.54
VSX2P58304 AC073912.3-201ENST00000624414 853 ntBASIC18.42■□□□□ 0.54
VSX2P58304 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VSX2P58304 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.42■□□□□ 0.54
VSX2P58304 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VSX2P58304 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.42■□□□□ 0.54
VSX2P58304 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VSX2P58304 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
VSX2P58304 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VSX2P58304 AL158211.5-201ENST00000623583 2518 ntBASIC18.42■□□□□ 0.54
VSX2P58304 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.41■□□□□ 0.54
VSX2P58304 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.41■□□□□ 0.54
VSX2P58304 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
VSX2P58304 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
VSX2P58304 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.41■□□□□ 0.54
VSX2P58304 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.41■□□□□ 0.54
VSX2P58304 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.41■□□□□ 0.54
VSX2P58304 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.41■□□□□ 0.54
VSX2P58304 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.41■□□□□ 0.54
VSX2P58304 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX2P58304 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
VSX2P58304 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
VSX2P58304 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
VSX2P58304 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VSX2P58304 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms