Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.34■□□□□ 0.85
BDNFP23560 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.34■□□□□ 0.85
BDNFP23560 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BDNFP23560 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.34■□□□□ 0.85
BDNFP23560 AC096733.2-201ENST00000609937 1394 ntBASIC20.34■□□□□ 0.85
BDNFP23560 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
BDNFP23560 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BDNFP23560 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BDNFP23560 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.33■□□□□ 0.85
BDNFP23560 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.33■□□□□ 0.85
BDNFP23560 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BDNFP23560 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BDNFP23560 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BDNFP23560 SDHAP1-207ENST00000440850 2000 ntBASIC20.33■□□□□ 0.85
BDNFP23560 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BDNFP23560 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BDNFP23560 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.33■□□□□ 0.85
BDNFP23560 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.33■□□□□ 0.85
BDNFP23560 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.33■□□□□ 0.85
BDNFP23560 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.33■□□□□ 0.85
BDNFP23560 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.33■□□□□ 0.85
BDNFP23560 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BDNFP23560 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
BDNFP23560 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.33■□□□□ 0.84
BDNFP23560 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.33■□□□□ 0.84
BDNFP23560 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
BDNFP23560 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
BDNFP23560 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
BDNFP23560 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
BDNFP23560 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
BDNFP23560 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BDNFP23560 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BDNFP23560 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
BDNFP23560 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BDNFP23560 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.32■□□□□ 0.84
BDNFP23560 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
BDNFP23560 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
BDNFP23560 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BDNFP23560 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
BDNFP23560 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BDNFP23560 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.32■□□□□ 0.84
BDNFP23560 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.32■□□□□ 0.84
BDNFP23560 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.32■□□□□ 0.84
BDNFP23560 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.32■□□□□ 0.84
BDNFP23560 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.32■□□□□ 0.84
BDNFP23560 C2orf69P3-201ENST00000565542 1120 ntBASIC20.32■□□□□ 0.84
BDNFP23560 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.32■□□□□ 0.84
BDNFP23560 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BDNFP23560 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BDNFP23560 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BDNFP23560 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
BDNFP23560 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
BDNFP23560 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.32■□□□□ 0.84
BDNFP23560 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
BDNFP23560 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.31■□□□□ 0.84
BDNFP23560 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.31■□□□□ 0.84
BDNFP23560 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BDNFP23560 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.31■□□□□ 0.84
BDNFP23560 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
BDNFP23560 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
BDNFP23560 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BDNFP23560 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BDNFP23560 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
BDNFP23560 KRT18P21-201ENST00000515767 1272 ntBASIC20.31■□□□□ 0.84
BDNFP23560 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
BDNFP23560 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.31■□□□□ 0.84
BDNFP23560 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
BDNFP23560 AL158211.5-201ENST00000623583 2518 ntBASIC20.31■□□□□ 0.84
BDNFP23560 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
BDNFP23560 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.31■□□□□ 0.84
BDNFP23560 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
BDNFP23560 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BDNFP23560 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BDNFP23560 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
BDNFP23560 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BDNFP23560 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BDNFP23560 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BDNFP23560 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
BDNFP23560 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
BDNFP23560 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
BDNFP23560 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
BDNFP23560 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BDNFP23560 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
BDNFP23560 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
BDNFP23560 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.3■□□□□ 0.84
BDNFP23560 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.3■□□□□ 0.84
BDNFP23560 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.3■□□□□ 0.84
BDNFP23560 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.3■□□□□ 0.84
BDNFP23560 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.3■□□□□ 0.84
BDNFP23560 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BDNFP23560 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.3■□□□□ 0.84
BDNFP23560 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.3■□□□□ 0.84
BDNFP23560 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.3■□□□□ 0.84
BDNFP23560 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
BDNFP23560 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
BDNFP23560 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BDNFP23560 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BDNFP23560 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BDNFP23560 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BDNFP23560 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms