Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH3P20585 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH3P20585 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MSH3P20585 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSH3P20585 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.17■□□□□ 0.66
MSH3P20585 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSH3P20585 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSH3P20585 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSH3P20585 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MSH3P20585 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MSH3P20585 AC233702.5-201ENST00000584107 538 ntBASIC19.17■□□□□ 0.66
MSH3P20585 Z99916.2-201ENST00000604037 246 ntBASIC19.17■□□□□ 0.66
MSH3P20585 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
MSH3P20585 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
MSH3P20585 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.17■□□□□ 0.66
MSH3P20585 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.17■□□□□ 0.66
MSH3P20585 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
MSH3P20585 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MSH3P20585 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MSH3P20585 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.17■□□□□ 0.66
MSH3P20585 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
MSH3P20585 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
MSH3P20585 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.16■□□□□ 0.66
MSH3P20585 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
MSH3P20585 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH3P20585 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
MSH3P20585 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
MSH3P20585 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH3P20585 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
MSH3P20585 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH3P20585 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.16■□□□□ 0.66
MSH3P20585 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.16■□□□□ 0.66
MSH3P20585 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
MSH3P20585 RPS2P4-201ENST00000476944 856 ntBASIC19.16■□□□□ 0.66
MSH3P20585 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MSH3P20585 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.16■□□□□ 0.66
MSH3P20585 AL445675.2-201ENST00000620291 557 ntBASIC19.16■□□□□ 0.66
MSH3P20585 CR392000.1-201ENST00000624770 1228 ntBASIC19.16■□□□□ 0.66
MSH3P20585 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
MSH3P20585 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MSH3P20585 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH3P20585 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH3P20585 ZNF815P-204ENST00000434898 1737 ntBASIC19.16■□□□□ 0.66
MSH3P20585 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH3P20585 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
MSH3P20585 KRT16P1-201ENST00000399124 1418 ntBASIC19.16■□□□□ 0.66
MSH3P20585 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH3P20585 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
MSH3P20585 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH3P20585 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
MSH3P20585 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.15■□□□□ 0.66
MSH3P20585 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
MSH3P20585 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH3P20585 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH3P20585 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.15■□□□□ 0.66
MSH3P20585 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MSH3P20585 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH3P20585 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.15■□□□□ 0.66
MSH3P20585 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.15■□□□□ 0.66
MSH3P20585 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.15■□□□□ 0.66
MSH3P20585 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.15■□□□□ 0.66
MSH3P20585 AC066615.1-201ENST00000640911 628 ntBASIC19.15■□□□□ 0.66
MSH3P20585 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH3P20585 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
MSH3P20585 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH3P20585 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MSH3P20585 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MSH3P20585 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH3P20585 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.15■□□□□ 0.66
MSH3P20585 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MSH3P20585 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH3P20585 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH3P20585 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH3P20585 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.14■□□□□ 0.66
MSH3P20585 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
MSH3P20585 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
MSH3P20585 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
MSH3P20585 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.14■□□□□ 0.65
MSH3P20585 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH3P20585 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.14■□□□□ 0.65
MSH3P20585 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MSH3P20585 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
MSH3P20585 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
MSH3P20585 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH3P20585 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
MSH3P20585 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.14■□□□□ 0.65
MSH3P20585 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.14■□□□□ 0.65
MSH3P20585 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.14■□□□□ 0.65
MSH3P20585 FAM197Y1-201ENST00000421178 764 ntBASIC19.14■□□□□ 0.65
MSH3P20585 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.14■□□□□ 0.65
MSH3P20585 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.14■□□□□ 0.65
MSH3P20585 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
MSH3P20585 AL160286.2-201ENST00000567150 934 ntBASIC19.14■□□□□ 0.65
MSH3P20585 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.14■□□□□ 0.65
MSH3P20585 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH3P20585 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.14■□□□□ 0.65
MSH3P20585 AC131212.4-201ENST00000623606 975 ntBASIC19.14■□□□□ 0.65
MSH3P20585 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.14■□□□□ 0.65
MSH3P20585 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.14■□□□□ 0.65
MSH3P20585 AL049637.2-201ENST00000641778 930 ntBASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms