Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A2P12110 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
COL6A2P12110 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A2P12110 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A2P12110 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A2P12110 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.04■□□□□ 0.64
COL6A2P12110 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.04■□□□□ 0.64
COL6A2P12110 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A2P12110 AC060766.5-201ENST00000590539 871 ntBASIC19.04■□□□□ 0.64
COL6A2P12110 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.04■□□□□ 0.64
COL6A2P12110 AC120498.8-201ENST00000614275 531 ntBASIC19.04■□□□□ 0.64
COL6A2P12110 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A2P12110 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.04■□□□□ 0.64
COL6A2P12110 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.04■□□□□ 0.64
COL6A2P12110 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A2P12110 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.04■□□□□ 0.64
COL6A2P12110 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
COL6A2P12110 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
COL6A2P12110 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
COL6A2P12110 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.03■□□□□ 0.64
COL6A2P12110 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.03■□□□□ 0.64
COL6A2P12110 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 TUBB8P6-201ENST00000436895 1288 ntBASIC19.03■□□□□ 0.64
COL6A2P12110 GUSBP6-202ENST00000438529 1198 ntBASIC19.03■□□□□ 0.64
COL6A2P12110 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.03■□□□□ 0.64
COL6A2P12110 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.03■□□□□ 0.64
COL6A2P12110 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.03■□□□□ 0.64
COL6A2P12110 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.03■□□□□ 0.64
COL6A2P12110 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.03■□□□□ 0.64
COL6A2P12110 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.03■□□□□ 0.64
COL6A2P12110 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.03■□□□□ 0.64
COL6A2P12110 AC092666.2-201ENST00000613287 246 ntBASIC19.03■□□□□ 0.64
COL6A2P12110 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.03■□□□□ 0.64
COL6A2P12110 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.03■□□□□ 0.64
COL6A2P12110 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
COL6A2P12110 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL6A2P12110 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
COL6A2P12110 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 FEM1AP3-201ENST00000403722 1741 ntBASIC19.03■□□□□ 0.64
COL6A2P12110 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A2P12110 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.02■□□□□ 0.64
COL6A2P12110 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A2P12110 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A2P12110 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.02■□□□□ 0.64
COL6A2P12110 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.02■□□□□ 0.64
COL6A2P12110 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.02■□□□□ 0.64
COL6A2P12110 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A2P12110 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A2P12110 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
COL6A2P12110 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.02■□□□□ 0.64
COL6A2P12110 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A2P12110 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
COL6A2P12110 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A2P12110 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.02■□□□□ 0.64
COL6A2P12110 NCF1B-203ENST00000435988 1254 ntBASIC19.02■□□□□ 0.64
COL6A2P12110 TSPY6P-201ENST00000448518 926 ntBASIC19.02■□□□□ 0.64
COL6A2P12110 PNMA6B-201ENST00000538162 1200 ntBASIC19.02■□□□□ 0.64
COL6A2P12110 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.02■□□□□ 0.64
COL6A2P12110 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A2P12110 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.02■□□□□ 0.64
COL6A2P12110 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.02■□□□□ 0.64
COL6A2P12110 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
COL6A2P12110 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.64
COL6A2P12110 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A2P12110 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A2P12110 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A2P12110 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL6A2P12110 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
COL6A2P12110 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL6A2P12110 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.02■□□□□ 0.63
COL6A2P12110 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL6A2P12110 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
COL6A2P12110 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.02■□□□□ 0.63
COL6A2P12110 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL6A2P12110 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
COL6A2P12110 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A2P12110 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A2P12110 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
COL6A2P12110 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A2P12110 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
COL6A2P12110 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
COL6A2P12110 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
COL6A2P12110 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A2P12110 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms