Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SHOX2O60902 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHOX2O60902 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHOX2O60902 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHOX2O60902 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SHOX2O60902 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHOX2O60902 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHOX2O60902 AC087633.2-202ENST00000565166 1439 ntBASIC19.32■□□□□ 0.68
SHOX2O60902 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.32■□□□□ 0.68
SHOX2O60902 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SHOX2O60902 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
SHOX2O60902 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHOX2O60902 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHOX2O60902 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHOX2O60902 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.31■□□□□ 0.68
SHOX2O60902 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.31■□□□□ 0.68
SHOX2O60902 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHOX2O60902 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SHOX2O60902 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHOX2O60902 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHOX2O60902 AC135279.3-201ENST00000610945 1311 ntBASIC19.31■□□□□ 0.68
SHOX2O60902 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHOX2O60902 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHOX2O60902 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.31■□□□□ 0.68
SHOX2O60902 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHOX2O60902 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHOX2O60902 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.31■□□□□ 0.68
SHOX2O60902 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHOX2O60902 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHOX2O60902 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.31■□□□□ 0.68
SHOX2O60902 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.31■□□□□ 0.68
SHOX2O60902 PGM5P4-201ENST00000421970 445 ntBASIC19.31■□□□□ 0.68
SHOX2O60902 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.31■□□□□ 0.68
SHOX2O60902 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.31■□□□□ 0.68
SHOX2O60902 AC131212.1-201ENST00000613771 668 ntBASIC19.31■□□□□ 0.68
SHOX2O60902 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHOX2O60902 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHOX2O60902 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHOX2O60902 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.31■□□□□ 0.68
SHOX2O60902 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SHOX2O60902 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.31■□□□□ 0.68
SHOX2O60902 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SHOX2O60902 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SHOX2O60902 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SHOX2O60902 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.31■□□□□ 0.68
SHOX2O60902 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHOX2O60902 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHOX2O60902 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHOX2O60902 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHOX2O60902 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.3■□□□□ 0.68
SHOX2O60902 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.3■□□□□ 0.68
SHOX2O60902 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.3■□□□□ 0.68
SHOX2O60902 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.3■□□□□ 0.68
SHOX2O60902 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
SHOX2O60902 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
SHOX2O60902 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHOX2O60902 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SHOX2O60902 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.3■□□□□ 0.68
SHOX2O60902 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.3■□□□□ 0.68
SHOX2O60902 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.3■□□□□ 0.68
SHOX2O60902 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.3■□□□□ 0.68
SHOX2O60902 KRT8P20-201ENST00000423953 1409 ntBASIC19.3■□□□□ 0.68
SHOX2O60902 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHOX2O60902 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHOX2O60902 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.3■□□□□ 0.68
SHOX2O60902 ZNF815P-204ENST00000434898 1737 ntBASIC19.3■□□□□ 0.68
SHOX2O60902 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.3■□□□□ 0.68
SHOX2O60902 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.3■□□□□ 0.68
SHOX2O60902 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHOX2O60902 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHOX2O60902 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHOX2O60902 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHOX2O60902 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SHOX2O60902 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHOX2O60902 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHOX2O60902 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHOX2O60902 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHOX2O60902 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHOX2O60902 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHOX2O60902 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.29■□□□□ 0.68
SHOX2O60902 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHOX2O60902 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHOX2O60902 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
SHOX2O60902 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.29■□□□□ 0.68
SHOX2O60902 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHOX2O60902 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SHOX2O60902 AC099791.1-201ENST00000416440 715 ntBASIC19.29■□□□□ 0.68
SHOX2O60902 SLC25A6P5-201ENST00000435663 894 ntBASIC19.29■□□□□ 0.68
SHOX2O60902 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.29■□□□□ 0.68
SHOX2O60902 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHOX2O60902 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.29■□□□□ 0.68
SHOX2O60902 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHOX2O60902 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SHOX2O60902 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
SHOX2O60902 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHOX2O60902 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHOX2O60902 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
SHOX2O60902 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
SHOX2O60902 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SHOX2O60902 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms