Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
TRIM13O60858 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM13O60858 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
TRIM13O60858 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
TRIM13O60858 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.96■□□□□ 0.63
TRIM13O60858 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM13O60858 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM13O60858 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
TRIM13O60858 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM13O60858 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 WIZP1-201ENST00000531444 2299 ntBASIC18.95■□□□□ 0.62
TRIM13O60858 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
TRIM13O60858 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM13O60858 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 IRX1P1-201ENST00000438849 1838 ntBASIC18.95■□□□□ 0.62
TRIM13O60858 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.95■□□□□ 0.62
TRIM13O60858 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
TRIM13O60858 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
TRIM13O60858 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM13O60858 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.95■□□□□ 0.62
TRIM13O60858 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
TRIM13O60858 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM13O60858 BX276092.2-201ENST00000417668 665 ntBASIC18.95■□□□□ 0.62
TRIM13O60858 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.95■□□□□ 0.62
TRIM13O60858 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.95■□□□□ 0.62
TRIM13O60858 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.95■□□□□ 0.62
TRIM13O60858 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM13O60858 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM13O60858 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 AC079598.2-202ENST00000546624 1451 ntBASIC18.95■□□□□ 0.62
TRIM13O60858 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM13O60858 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM13O60858 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM13O60858 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM13O60858 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.94■□□□□ 0.62
TRIM13O60858 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM13O60858 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.94■□□□□ 0.62
TRIM13O60858 AF201337.1-201ENST00000520239 748 ntBASIC18.94■□□□□ 0.62
TRIM13O60858 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.94■□□□□ 0.62
TRIM13O60858 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.94■□□□□ 0.62
TRIM13O60858 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.94■□□□□ 0.62
TRIM13O60858 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM13O60858 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM13O60858 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
TRIM13O60858 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.94■□□□□ 0.62
TRIM13O60858 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM13O60858 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
TRIM13O60858 AC090164.3-201ENST00000610780 2143 ntBASIC18.94■□□□□ 0.62
TRIM13O60858 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM13O60858 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.93■□□□□ 0.62
TRIM13O60858 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM13O60858 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM13O60858 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
TRIM13O60858 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM13O60858 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM13O60858 KRT8P8-201ENST00000434750 1448 ntBASIC18.93■□□□□ 0.62
TRIM13O60858 AC005082.1-201ENST00000413042 2259 ntBASIC18.93■□□□□ 0.62
TRIM13O60858 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
TRIM13O60858 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM13O60858 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM13O60858 AC105036.2-201ENST00000569468 176 ntBASIC18.93■□□□□ 0.62
TRIM13O60858 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms