Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 KRT8P20-201ENST00000423953 1409 ntBASIC14.1□□□□□ -0.15
SMKR1H3BMG3 CD44-222ENST00000526025 1052 ntTSL 2 BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 EFTUD1P1-204ENST00000560401 1798 ntBASIC14.09□□□□□ -0.15
SMKR1H3BMG3 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 AC106820.2-201ENST00000563775 3264 ntBASIC14.09□□□□□ -0.15
SMKR1H3BMG3 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 PHGDH-210ENST00000641115 1638 ntBASIC14.09□□□□□ -0.15
SMKR1H3BMG3 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 USP39-202ENST00000409025 1946 ntTSL 5 BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SMKR1H3BMG3 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SMKR1H3BMG3 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SMKR1H3BMG3 CD276-201ENST00000318424 2738 ntTSL 5 BASIC14.08□□□□□ -0.15
SMKR1H3BMG3 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 CYP21A1P-202ENST00000354927 1481 ntBASIC14.08□□□□□ -0.16
SMKR1H3BMG3 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 AC067852.2-201ENST00000590513 2313 ntBASIC14.08□□□□□ -0.16
SMKR1H3BMG3 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
SMKR1H3BMG3 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SMKR1H3BMG3 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SMKR1H3BMG3 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SMKR1H3BMG3 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SMKR1H3BMG3 PXK-206ENST00000463280 2825 ntTSL 2 BASIC14.07□□□□□ -0.16
SMKR1H3BMG3 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC14.07□□□□□ -0.16
SMKR1H3BMG3 Z98044.1-201ENST00000632503 1764 ntBASIC14.07□□□□□ -0.16
SMKR1H3BMG3 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SMKR1H3BMG3 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
SMKR1H3BMG3 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC14.07□□□□□ -0.16
SMKR1H3BMG3 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
SMKR1H3BMG3 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SMKR1H3BMG3 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SMKR1H3BMG3 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
SMKR1H3BMG3 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SMKR1H3BMG3 NME4-202ENST00000382940 766 ntTSL 3 BASIC14.07□□□□□ -0.16
SMKR1H3BMG3 MIR939-201ENST00000401314 82 ntBASIC14.07□□□□□ -0.16
SMKR1H3BMG3 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms