Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.31■□□□□ 0.68
TRIM49D1C9J1S8 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM49D1C9J1S8 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM49D1C9J1S8 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM49D1C9J1S8 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM49D1C9J1S8 WIZP1-201ENST00000531444 2299 ntBASIC19.31■□□□□ 0.68
TRIM49D1C9J1S8 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM49D1C9J1S8 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM49D1C9J1S8 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TRIM49D1C9J1S8 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.31■□□□□ 0.68
TRIM49D1C9J1S8 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM49D1C9J1S8 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 AL162430.1-201ENST00000480705 870 ntBASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM49D1C9J1S8 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 AC005082.1-201ENST00000413042 2259 ntBASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 RARRES2P6-201ENST00000567333 442 ntBASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 AC105036.2-201ENST00000569468 176 ntBASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM49D1C9J1S8 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 AC093525.10-201ENST00000625130 1569 ntBASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 IRX1P1-201ENST00000438849 1838 ntBASIC19.28■□□□□ 0.68
TRIM49D1C9J1S8 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 AC026471.1-201ENST00000564629 3026 ntBASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms