Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
MSH5O43196 SLC7A8-206ENST00000469263 3557 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
MSH5O43196 MATR3-229ENST00000361059 3970 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
MSH5O43196 RN7SKP30-201ENST00000411373 334 ntBASIC10.37□□□□□ -0.75
MSH5O43196 AP000997.1-201ENST00000424313 479 ntTSL 3 BASIC10.37□□□□□ -0.75
MSH5O43196 LINC00881-201ENST00000467995 589 ntTSL 4 BASIC10.37□□□□□ -0.75
MSH5O43196 AC021205.2-201ENST00000480069 347 ntBASIC10.37□□□□□ -0.75
MSH5O43196 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
MSH5O43196 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC10.37□□□□□ -0.75
MSH5O43196 IGBP1P1-201ENST00000554337 1009 ntBASIC10.37□□□□□ -0.75
MSH5O43196 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC10.37□□□□□ -0.75
MSH5O43196 FDPSP3-201ENST00000556903 1013 ntBASIC10.37□□□□□ -0.75
MSH5O43196 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC10.37□□□□□ -0.75
MSH5O43196 AC074135.1-202ENST00000600223 563 ntTSL 3 BASIC10.37□□□□□ -0.75
MSH5O43196 AL078624.2-201ENST00000605063 554 ntBASIC10.37□□□□□ -0.75
MSH5O43196 TRBV10-3-201ENST00000611462 368 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
MSH5O43196 AC106782.7-201ENST00000624024 418 ntBASIC10.37□□□□□ -0.75
MSH5O43196 AC133555.5-201ENST00000624430 418 ntBASIC10.37□□□□□ -0.75
MSH5O43196 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC10.37□□□□□ -0.75
MSH5O43196 ASB8-218ENST00000629941 278 ntTSL 5 BASIC10.37□□□□□ -0.75
MSH5O43196 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
MSH5O43196 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
MSH5O43196 CYFIP2-210ENST00000522463 3477 ntTSL 2 BASIC10.37□□□□□ -0.75
MSH5O43196 ZNF430-203ENST00000595401 3021 ntTSL 2 BASIC10.37□□□□□ -0.75
MSH5O43196 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
MSH5O43196 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
MSH5O43196 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC10.37□□□□□ -0.75
MSH5O43196 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
MSH5O43196 AL449283.1-201ENST00000602631 3403 ntBASIC10.36□□□□□ -0.75
MSH5O43196 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
MSH5O43196 BCL2L14-204ENST00000396367 1886 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
MSH5O43196 AC087430.1-201ENST00000451707 3699 ntTSL 2 BASIC10.36□□□□□ -0.75
MSH5O43196 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
MSH5O43196 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC10.36□□□□□ -0.75
MSH5O43196 MYO5C-201ENST00000261839 6971 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
MSH5O43196 BEND2-202ENST00000380033 4611 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
MSH5O43196 FAM13A-205ENST00000503556 3386 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
MSH5O43196 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC10.36□□□□□ -0.75
MSH5O43196 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
MSH5O43196 RNA5SP218-201ENST00000363188 109 ntBASIC10.36□□□□□ -0.75
MSH5O43196 RNU6-1014P-201ENST00000383940 103 ntBASIC10.36□□□□□ -0.75
MSH5O43196 MIR616-201ENST00000385293 97 ntBASIC10.36□□□□□ -0.75
MSH5O43196 RPL21P3-201ENST00000395517 478 ntBASIC10.36□□□□□ -0.75
MSH5O43196 UBA52P6-201ENST00000399822 382 ntBASIC10.36□□□□□ -0.75
MSH5O43196 SNORA11.5-201ENST00000408163 128 ntBASIC10.36□□□□□ -0.75
MSH5O43196 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC10.36□□□□□ -0.75
MSH5O43196 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC10.36□□□□□ -0.75
MSH5O43196 LINC01525-201ENST00000442182 511 ntTSL 2 BASIC10.36□□□□□ -0.75
MSH5O43196 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC10.36□□□□□ -0.75
MSH5O43196 EZR-AS1-201ENST00000451712 217 ntTSL 5 BASIC10.36□□□□□ -0.75
MSH5O43196 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
MSH5O43196 AP003385.3-201ENST00000472498 287 ntBASIC10.36□□□□□ -0.75
MSH5O43196 AC093767.1-201ENST00000504523 156 ntBASIC10.36□□□□□ -0.75
MSH5O43196 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC10.36□□□□□ -0.75
MSH5O43196 RNU6-561P-201ENST00000516222 102 ntBASIC10.36□□□□□ -0.75
MSH5O43196 RN7SKP60-201ENST00000516985 239 ntBASIC10.36□□□□□ -0.75
MSH5O43196 RN7SL652P-201ENST00000577769 300 ntBASIC10.36□□□□□ -0.75
MSH5O43196 DEFB117-201ENST00000602356 141 ntBASIC10.36□□□□□ -0.75
MSH5O43196 SNRPGP20-201ENST00000604477 205 ntBASIC10.36□□□□□ -0.75
MSH5O43196 IGLL4P-201ENST00000614590 133 ntBASIC10.36□□□□□ -0.75
MSH5O43196 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC10.36□□□□□ -0.75
MSH5O43196 MIR4496-201ENST00000635896 61 ntBASIC10.36□□□□□ -0.75
MSH5O43196 MIR2052-201ENST00000636055 55 ntBASIC10.36□□□□□ -0.75
MSH5O43196 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
MSH5O43196 NCOA4-201ENST00000578454 2307 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
MSH5O43196 NXF2B-202ENST00000602195 2322 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
MSH5O43196 NXF2-202ENST00000625106 2337 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
MSH5O43196 CAST-202ENST00000325674 3356 ntTSL 5 BASIC10.36□□□□□ -0.75
MSH5O43196 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
MSH5O43196 DIO2-201ENST00000422005 6272 ntTSL 5 BASIC10.36□□□□□ -0.75
MSH5O43196 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC10.36□□□□□ -0.75
MSH5O43196 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
MSH5O43196 ATG2B-202ENST00000359933 13684 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
MSH5O43196 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 LINC02102-201ENST00000503989 3364 ntTSL 2 BASIC10.35□□□□□ -0.75
MSH5O43196 CDC42SE2-208ENST00000505065 4352 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 CNTN4-202ENST00000397461 5198 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
MSH5O43196 PDXDC1-203ENST00000450288 4171 ntTSL 5 BASIC10.35□□□□□ -0.75
MSH5O43196 PTPRD-204ENST00000397606 5038 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 PTPRD-211ENST00000486161 5039 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 ATXN3-216ENST00000545170 6950 ntTSL 5 BASIC10.35□□□□□ -0.75
MSH5O43196 AC016747.1-201ENST00000420918 2532 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 TROVE2-201ENST00000367441 1791 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 MS4A7-202ENST00000358246 2871 ntTSL 3 BASIC10.35□□□□□ -0.75
MSH5O43196 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 UGT2B4-201ENST00000305107 2103 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 MIR590-201ENST00000385008 97 ntBASIC10.35□□□□□ -0.75
MSH5O43196 MIR640-201ENST00000385086 96 ntBASIC10.35□□□□□ -0.75
MSH5O43196 RNA5SP213-201ENST00000391031 106 ntBASIC10.35□□□□□ -0.75
MSH5O43196 AC092802.3-201ENST00000434207 420 ntTSL 3 BASIC10.35□□□□□ -0.75
MSH5O43196 RPS7P4-201ENST00000444127 582 ntBASIC10.35□□□□□ -0.75
MSH5O43196 AC005840.2-201ENST00000447193 355 ntBASIC10.35□□□□□ -0.75
MSH5O43196 PPIA-203ENST00000451562 544 ntTSL 2 BASIC10.35□□□□□ -0.75
MSH5O43196 AC107297.1-201ENST00000459991 176 ntBASIC10.35□□□□□ -0.75
MSH5O43196 RPL39P34-201ENST00000477141 156 ntBASIC10.35□□□□□ -0.75
MSH5O43196 RNA5SP101-201ENST00000517036 108 ntBASIC10.35□□□□□ -0.75
MSH5O43196 PPIAL4D-201ENST00000544708 495 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 143.6 ms