RNA–Protein interactions for RNA: ENST00000257189.4

DSG3-201, Transcript of desmoglein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DSG3, Length 5,525 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DSG3-201ENST00000257189 DCAF8L2P0C7V8 631 aa14.24□□□□□ -0.13
DSG3-201ENST00000257189 PELP1Q8IZL8 1130 aaKnown RBP13.63□□□□□ -0.23
DSG3-201ENST00000257189 NISCHQ9Y2I1 1504 aa13.41□□□□□ -0.26
DSG3-201ENST00000257189 MYT1Q01538 1121 aa13.38□□□□□ -0.27
DSG3-201ENST00000257189 FAM9AQ8IZU1 332 aaPredicted RBP13.08□□□□□ -0.32
DSG3-201ENST00000257189 CCER1Q8TC90 406 aaPredicted RBP12.95□□□□□ -0.34
DSG3-201ENST00000257189 ERICH6Q7L0X2 663 aa12.88□□□□□ -0.35
DSG3-201ENST00000257189 CENPBP07199 599 aaPredicted RBP12.78□□□□□ -0.36
DSG3-201ENST00000257189 ZEB1P37275 1124 aaPredicted RBP12.62□□□□□ -0.39
DSG3-201ENST00000257189 YTHDC1Q96MU7 727 aaKnown RBP12.52□□□□□ -0.41
DSG3-201ENST00000257189 SUPT5HO00267 1087 aaKnown RBP12.48□□□□□ -0.41
DSG3-201ENST00000257189 APLP2Q06481 763 aa12.47□□□□□ -0.41
DSG3-201ENST00000257189 AEBP2Q6ZN18 517 aaPredicted RBP12.46□□□□□ -0.41
DSG3-201ENST00000257189 ABCC9O60706 1549 aa12.44□□□□□ -0.42
DSG3-201ENST00000257189 NEFLP07196 543 aa12.42□□□□□ -0.42
DSG3-201ENST00000257189 TTBK1Q5TCY1 1321 aaPredicted RBP12.41□□□□□ -0.42
DSG3-201ENST00000257189 MYT1LQ9UL68 1186 aa12.21□□□□□ -0.46
DSG3-201ENST00000257189 PCGF6Q9BYE7 350 aa12.19□□□□□ -0.46
DSG3-201ENST00000257189 PABPN1Q86U42 306 aaKnown RBP eCLIP12.18□□□□□ -0.46
DSG3-201ENST00000257189 SHROOM4Q9ULL8 1493 aa12.17□□□□□ -0.46
DSG3-201ENST00000257189 DAXXQ9UER7 740 aaPredicted RBP12.16□□□□□ -0.46
DSG3-201ENST00000257189 TRIM41Q8WV44 630 aa12.09□□□□□ -0.47
DSG3-201ENST00000257189 TRHP20396 242 aaPredicted RBP12.03□□□□□ -0.48
DSG3-201ENST00000257189 RTL5Q5HYW3 569 aaPredicted RBP12.02□□□□□ -0.48
DSG3-201ENST00000257189 ATP1B4Q9UN42 357 aaPredicted RBP12.01□□□□□ -0.49
DSG3-201ENST00000257189 EHMT2Q96KQ7 1210 aa11.97□□□□□ -0.49
DSG3-201ENST00000257189 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.96□□□□□ -0.5
DSG3-201ENST00000257189 FBLN2P98095 1184 aa11.96□□□□□ -0.5
DSG3-201ENST00000257189 HNRNPUL2Q1KMD3 747 aaKnown RBP11.96□□□□□ -0.5
DSG3-201ENST00000257189 NPM1P06748 294 aaKnown RBP eCLIP11.89□□□□□ -0.51
DSG3-201ENST00000257189 PLPPR3Q6T4P5 718 aa11.85□□□□□ -0.51
DSG3-201ENST00000257189 HRCP23327 699 aa11.83□□□□□ -0.52
DSG3-201ENST00000257189 ZNF316A6NFI3 1004 aaPredicted RBP11.83□□□□□ -0.52
DSG3-201ENST00000257189 CHIC1Q5VXU3 224 aa11.79□□□□□ -0.52
DSG3-201ENST00000257189 TRIM26Q12899 539 aaPredicted RBP11.78□□□□□ -0.52
DSG3-201ENST00000257189 RANGAP1P46060 587 aaPredicted RBP11.78□□□□□ -0.52
DSG3-201ENST00000257189 ESF1Q9H501 851 aaKnown RBP11.76□□□□□ -0.53
DSG3-201ENST00000257189 GLIPR1L2Q4G1C9 344 aa11.74□□□□□ -0.53
DSG3-201ENST00000257189 ERCC6Q03468 1493 aa11.64□□□□□ -0.55
DSG3-201ENST00000257189 CLSPNQ9HAW4 1339 aa11.59□□□□□ -0.55
DSG3-201ENST00000257189 UBTFP17480 764 aaKnown RBP11.58□□□□□ -0.55
DSG3-201ENST00000257189 CDK11AQ9UQ88 783 aaPredicted RBP11.57□□□□□ -0.56
DSG3-201ENST00000257189 BCANQ96GW7 911 aa11.52□□□□□ -0.57
DSG3-201ENST00000257189 RB1CC1Q8TDY2 1594 aa11.52□□□□□ -0.57
DSG3-201ENST00000257189 SCAF1Q9H7N4 1312 aaKnown RBP11.52□□□□□ -0.57
DSG3-201ENST00000257189 DIEXFQ68CQ4 756 aaKnown RBP11.51□□□□□ -0.57
DSG3-201ENST00000257189 ANP32BQ92688 251 aaKnown RBP11.45□□□□□ -0.58
DSG3-201ENST00000257189 ANP32AP39687 249 aaKnown RBP11.44□□□□□ -0.58
DSG3-201ENST00000257189 GTF3C3Q9Y5Q9 886 aa11.43□□□□□ -0.58
DSG3-201ENST00000257189 CHMP7Q8WUX9 453 aaPredicted RBP11.42□□□□□ -0.58
DSG3-201ENST00000257189 EIF5BO60841 1220 aaKnown RBP11.41□□□□□ -0.58
DSG3-201ENST00000257189 ZBTB47Q9UFB7 747 aaPredicted RBP11.38□□□□□ -0.59
DSG3-201ENST00000257189 SENP3Q9H4L4 574 aaPredicted RBP11.37□□□□□ -0.59
DSG3-201ENST00000257189 POLR3GLQ9BT43 218 aa11.36□□□□□ -0.59
DSG3-201ENST00000257189 ARID4BQ4LE39 1312 aaPredicted RBP11.36□□□□□ -0.59
DSG3-201ENST00000257189 PHF23Q9BUL5 403 aaPredicted RBP11.35□□□□□ -0.59
DSG3-201ENST00000257189 DCAF8L1A6NGE4 600 aa11.32□□□□□ -0.6
DSG3-201ENST00000257189 ACIN1Q9UKV3 1341 aaKnown RBP11.32□□□□□ -0.6
DSG3-201ENST00000257189 STAG3Q9UJ98 1225 aa11.31□□□□□ -0.6
DSG3-201ENST00000257189 SCRIBQ14160 1630 aa11.3□□□□□ -0.6
DSG3-201ENST00000257189 ANP32CO43423 234 aa11.3□□□□□ -0.6
DSG3-201ENST00000257189 TNNT2P45379 298 aaPredicted RBP11.24□□□□□ -0.61
DSG3-201ENST00000257189 SLC4A1APQ9BWU0 796 aaKnown RBP11.19□□□□□ -0.62
DSG3-201ENST00000257189 PPARGC1BQ86YN6 1023 aaKnown RBP11.19□□□□□ -0.62
DSG3-201ENST00000257189 UPF2Q9HAU5 1272 aaKnown RBP11.19□□□□□ -0.62
DSG3-201ENST00000257189 ITGAEP38570 1179 aa11.18□□□□□ -0.62
DSG3-201ENST00000257189 ANP32EQ9BTT0 268 aa11.18□□□□□ -0.62
DSG3-201ENST00000257189 NACADO15069 1562 aa11.17□□□□□ -0.62
DSG3-201ENST00000257189 CANXP27824 592 aaKnown RBP11.16□□□□□ -0.62
DSG3-201ENST00000257189 NEFMP07197 916 aa11.15□□□□□ -0.62
DSG3-201ENST00000257189 CCDC180Q9P1Z9 1646 aa11.15□□□□□ -0.63
DSG3-201ENST00000257189 C14orf37Q86TY3 774 aa11.13□□□□□ -0.63
DSG3-201ENST00000257189 OSCARQ8IYS5 282 aa11.12□□□□□ -0.63
DSG3-201ENST00000257189 CECR2Q9BXF3 1484 aa11.12□□□□□ -0.63
DSG3-201ENST00000257189 FOXD1Q16676 465 aa11.11□□□□□ -0.63
DSG3-201ENST00000257189 TRIM44Q96DX7 344 aaPredicted RBP11.11□□□□□ -0.63
DSG3-201ENST00000257189 A0A0G2JS52 829 aa11.11□□□□□ -0.63
DSG3-201ENST00000257189 HSP90AA1P07900 732 aaKnown RBP11.1□□□□□ -0.63
DSG3-201ENST00000257189 CNGB1Q14028 1251 aaPredicted RBP11.08□□□□□ -0.64
DSG3-201ENST00000257189 HAP1P54257 671 aaPredicted RBP11.07□□□□□ -0.64
DSG3-201ENST00000257189 ARID3CA6NKF2 412 aa11.07□□□□□ -0.64
DSG3-201ENST00000257189 NPM2Q86SE8 214 aaKnown RBP11.06□□□□□ -0.64
DSG3-201ENST00000257189 ERICH6BQ5W0A0 696 aa11.05□□□□□ -0.64
DSG3-201ENST00000257189 NCLP19338 710 aaKnown RBP11.05□□□□□ -0.64
DSG3-201ENST00000257189 PDS5BQ9NTI5 1447 aa11.03□□□□□ -0.64
DSG3-201ENST00000257189 DDRGK1Q96HY6 314 aa11.03□□□□□ -0.64
DSG3-201ENST00000257189 ZNF777Q9ULD5 760 aaPredicted RBP11.03□□□□□ -0.64
DSG3-201ENST00000257189 CYB5RLQ6IPT4 315 aa11.01□□□□□ -0.65
DSG3-201ENST00000257189 KCNH8Q96L42 1107 aa11.01□□□□□ -0.65
DSG3-201ENST00000257189 FKBP8Q14318 412 aa11□□□□□ -0.65
DSG3-201ENST00000257189 CDK11BP21127 795 aaKnown RBP10.99□□□□□ -0.65
DSG3-201ENST00000257189 CHGAP10645 457 aaKnown RBP10.98□□□□□ -0.65
DSG3-201ENST00000257189 LOC105371045A0A1W2PR82 267 aa10.98□□□□□ -0.65
DSG3-201ENST00000257189 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.98□□□□□ -0.65
DSG3-201ENST00000257189 TRIM52Q96A61 297 aa10.97□□□□□ -0.65
DSG3-201ENST00000257189 PPP1R15AO75807 674 aaPredicted RBP10.97□□□□□ -0.65
DSG3-201ENST00000257189 BECN1Q14457 450 aa10.95□□□□□ -0.66
DSG3-201ENST00000257189 BAZ1BQ9UIG0 1483 aaKnown RBP10.95□□□□□ -0.66
DSG3-201ENST00000257189 FAM50AQ14320 339 aaKnown RBP10.94□□□□□ -0.66
DSG3-201ENST00000257189 NEUROD1Q13562 356 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms