Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 PABPC1P6-201ENST00000445594 1829 ntBASIC10.42□□□□□ -0.74
MSH5O43196 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC10.42□□□□□ -0.74
MSH5O43196 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
MSH5O43196 GJA1-201ENST00000282561 3037 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
MSH5O43196 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
MSH5O43196 AL450992.1-201ENST00000432386 4109 ntTSL 2 BASIC10.42□□□□□ -0.74
MSH5O43196 TRIM55-202ENST00000315962 2914 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
MSH5O43196 C9orf131-205ENST00000421362 3259 ntAPPRIS ALT2 TSL 4 BASIC10.42□□□□□ -0.74
MSH5O43196 AL355488.2-201ENST00000609909 2850 ntBASIC10.42□□□□□ -0.74
MSH5O43196 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC10.42□□□□□ -0.74
MSH5O43196 UBE2V2-207ENST00000523111 4373 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
MSH5O43196 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC10.42□□□□□ -0.74
MSH5O43196 LRRC37A9P-201ENST00000603850 5376 ntBASIC10.42□□□□□ -0.74
MSH5O43196 MIR578-201ENST00000384828 96 ntBASIC10.42□□□□□ -0.74
MSH5O43196 MIR626-201ENST00000385032 94 ntBASIC10.42□□□□□ -0.74
MSH5O43196 RN7SKP236-201ENST00000410635 284 ntBASIC10.42□□□□□ -0.74
MSH5O43196 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC10.42□□□□□ -0.74
MSH5O43196 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC10.42□□□□□ -0.74
MSH5O43196 RPS17P13-201ENST00000448974 407 ntBASIC10.42□□□□□ -0.74
MSH5O43196 AC009120.1-201ENST00000493458 473 ntBASIC10.42□□□□□ -0.74
MSH5O43196 MRPL49P1-201ENST00000505951 535 ntBASIC10.42□□□□□ -0.74
MSH5O43196 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
MSH5O43196 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC10.42□□□□□ -0.74
MSH5O43196 MIR1273F-201ENST00000580581 99 ntBASIC10.42□□□□□ -0.74
MSH5O43196 AC091178.2-201ENST00000584401 117 ntBASIC10.42□□□□□ -0.74
MSH5O43196 AC110801.1-201ENST00000623590 212 ntBASIC10.42□□□□□ -0.74
MSH5O43196 DNAJC5G-203ENST00000404433 1647 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
MSH5O43196 GRIP1-201ENST00000359742 5216 ntTSL 5 BASIC10.42□□□□□ -0.74
MSH5O43196 ELF5-201ENST00000257832 2321 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
MSH5O43196 RAB5B-210ENST00000553116 3322 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
MSH5O43196 RNF14-202ENST00000356143 3999 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
MSH5O43196 CENPCP1-201ENST00000533085 2578 ntBASIC10.42□□□□□ -0.74
MSH5O43196 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC10.42□□□□□ -0.74
MSH5O43196 GARNL3-202ENST00000373387 3800 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
MSH5O43196 POLR1B-204ENST00000417433 3836 ntTSL 2 BASIC10.42□□□□□ -0.74
MSH5O43196 PIGN-231ENST00000639174 4095 ntTSL 5 BASIC10.42□□□□□ -0.74
MSH5O43196 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC10.42□□□□□ -0.74
MSH5O43196 AKAP17BP-201ENST00000431706 2719 ntBASIC10.42□□□□□ -0.74
MSH5O43196 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC10.41□□□□□ -0.74
MSH5O43196 GON4L-218ENST00000620426 5506 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
MSH5O43196 DAZ2-206ENST00000382440 4119 ntAPPRIS P5 TSL 5 BASIC10.41□□□□□ -0.74
MSH5O43196 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
MSH5O43196 ZNF655-213ENST00000425063 4624 ntTSL 3 BASIC10.41□□□□□ -0.74
MSH5O43196 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
MSH5O43196 GABRA6-201ENST00000274545 2128 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
MSH5O43196 RNY1P1-201ENST00000364372 112 ntBASIC10.41□□□□□ -0.74
MSH5O43196 SNORA51.7-201ENST00000384171 134 ntBASIC10.41□□□□□ -0.74
MSH5O43196 RNU6-763P-201ENST00000390865 106 ntBASIC10.41□□□□□ -0.74
MSH5O43196 RNU6ATAC16P-201ENST00000408591 138 ntBASIC10.41□□□□□ -0.74
MSH5O43196 RPS15AP40-201ENST00000419621 391 ntBASIC10.41□□□□□ -0.74
MSH5O43196 MTATP8P2-201ENST00000435212 202 ntBASIC10.41□□□□□ -0.74
MSH5O43196 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC10.41□□□□□ -0.74
MSH5O43196 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC10.41□□□□□ -0.74
MSH5O43196 AC026700.1-201ENST00000512074 544 ntBASIC10.41□□□□□ -0.74
MSH5O43196 RNU6-966P-201ENST00000516479 104 ntBASIC10.41□□□□□ -0.74
MSH5O43196 RN7SKP49-201ENST00000516675 260 ntBASIC10.41□□□□□ -0.74
MSH5O43196 DEFB108D-201ENST00000527787 222 ntBASIC10.41□□□□□ -0.74
MSH5O43196 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC10.41□□□□□ -0.74
MSH5O43196 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC10.41□□□□□ -0.74
MSH5O43196 BX005040.2-201ENST00000620504 370 ntBASIC10.41□□□□□ -0.74
MSH5O43196 AC092628.2-201ENST00000622492 339 ntBASIC10.41□□□□□ -0.74
MSH5O43196 AC008498.2-201ENST00000624033 2322 ntBASIC10.41□□□□□ -0.74
MSH5O43196 FBXO38-201ENST00000296701 3680 ntTSL 2 BASIC10.41□□□□□ -0.74
MSH5O43196 SZT2-210ENST00000634258 11045 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
MSH5O43196 HPS5-201ENST00000349215 4491 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
MSH5O43196 TMCO1-208ENST00000612311 4468 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
MSH5O43196 COL21A1-212ENST00000535941 3369 ntAPPRIS ALT1 TSL 5 BASIC10.41□□□□□ -0.74
MSH5O43196 SLC11A2-202ENST00000262052 4132 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
MSH5O43196 SALL1P1-201ENST00000438101 3837 ntBASIC10.41□□□□□ -0.74
MSH5O43196 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
MSH5O43196 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
MSH5O43196 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
MSH5O43196 TMEM236-201ENST00000377495 5464 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.74
MSH5O43196 PIWIL4-201ENST00000299001 3199 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
MSH5O43196 MAPK8-201ENST00000360332 5438 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
MSH5O43196 AL355488.1-201ENST00000449169 2611 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
MSH5O43196 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
MSH5O43196 SP110-203ENST00000358662 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
MSH5O43196 ZNF544-201ENST00000269829 3547 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
MSH5O43196 SHROOM4-202ENST00000376020 9556 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.74
MSH5O43196 ZNF334-201ENST00000347606 3890 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
MSH5O43196 RN7SKP227-201ENST00000364445 330 ntBASIC10.4□□□□□ -0.74
MSH5O43196 FHL1-203ENST00000370676 833 ntTSL 5 BASIC10.4□□□□□ -0.74
MSH5O43196 C9orf92-202ENST00000380685 379 ntAPPRIS ALT2 TSL 2 BASIC10.4□□□□□ -0.74
MSH5O43196 RNY3P5-201ENST00000384127 102 ntBASIC10.4□□□□□ -0.74
MSH5O43196 AC084880.1-201ENST00000392530 545 ntBASIC10.4□□□□□ -0.74
MSH5O43196 RPL24P7-201ENST00000399435 453 ntBASIC10.4□□□□□ -0.74
MSH5O43196 PPIL1P1-201ENST00000423936 499 ntBASIC10.4□□□□□ -0.74
MSH5O43196 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC10.4□□□□□ -0.74
MSH5O43196 AP000907.1-201ENST00000428428 510 ntBASIC10.4□□□□□ -0.74
MSH5O43196 AP001628.1-201ENST00000431150 285 ntTSL 5 BASIC10.4□□□□□ -0.74
MSH5O43196 RPL39P29-201ENST00000447779 157 ntBASIC10.4□□□□□ -0.74
MSH5O43196 AC010531.2-201ENST00000465012 153 ntBASIC10.4□□□□□ -0.74
MSH5O43196 RN7SL145P-201ENST00000469955 296 ntBASIC10.4□□□□□ -0.74
MSH5O43196 RN7SL182P-201ENST00000496499 300 ntBASIC10.4□□□□□ -0.74
MSH5O43196 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC10.4□□□□□ -0.74
MSH5O43196 GUSBP3-201ENST00000509348 423 ntBASIC10.4□□□□□ -0.74
MSH5O43196 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC10.4□□□□□ -0.74
MSH5O43196 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC10.4□□□□□ -0.74
MSH5O43196 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC10.4□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms