Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
RHBDD3Q9Y3P4 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RHBDD3Q9Y3P4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RHBDD3Q9Y3P4 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RHBDD3Q9Y3P4 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC16.9■□□□□ 0.3
RHBDD3Q9Y3P4 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RHBDD3Q9Y3P4 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
RHBDD3Q9Y3P4 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RHBDD3Q9Y3P4 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
RHBDD3Q9Y3P4 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
RHBDD3Q9Y3P4 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.3
RHBDD3Q9Y3P4 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 RPS2P52-201ENST00000469610 820 ntBASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 TFP1-202ENST00000475455 1573 ntBASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 AL138781.2-201ENST00000617896 1843 ntBASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RHBDD3Q9Y3P4 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 CROCCP3-202ENST00000420820 1947 ntBASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RHBDD3Q9Y3P4 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 OR2A1-AS1-207ENST00000486094 819 ntBASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDD3Q9Y3P4 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms