Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 AC112907.3-201ENST00000577781 2400 ntBASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAIPQ9BWF2 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21.14■□□□□ 0.98
TRAIPQ9BWF2 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TRAIPQ9BWF2 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TRAIPQ9BWF2 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
TRAIPQ9BWF2 AC099778.1-201ENST00000568593 1911 ntBASIC21.14■□□□□ 0.98
TRAIPQ9BWF2 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAIPQ9BWF2 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC21.14■□□□□ 0.97
TRAIPQ9BWF2 AL137013.1-201ENST00000432946 1228 ntBASIC21.14■□□□□ 0.97
TRAIPQ9BWF2 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.14■□□□□ 0.97
TRAIPQ9BWF2 AC091390.4-202ENST00000476426 537 ntBASIC21.14■□□□□ 0.97
TRAIPQ9BWF2 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.14■□□□□ 0.97
TRAIPQ9BWF2 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
TRAIPQ9BWF2 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
TRAIPQ9BWF2 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.14■□□□□ 0.97
TRAIPQ9BWF2 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAIPQ9BWF2 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC21.14■□□□□ 0.97
TRAIPQ9BWF2 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
TRAIPQ9BWF2 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 FAM207BP-201ENST00000447172 505 ntBASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
TRAIPQ9BWF2 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 AC128688.1-201ENST00000487626 519 ntBASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 AL160286.2-201ENST00000567150 934 ntBASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 SLC25A1P4-201ENST00000567977 778 ntBASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.12■□□□□ 0.97
TRAIPQ9BWF2 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 AL691432.2-201ENST00000607222 2038 ntBASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 AL590326.2-201ENST00000625139 305 ntBASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRAIPQ9BWF2 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms