Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NR1H4Q96RI1 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 AL139384.1-201ENST00000612143 3047 ntBASIC18.17■□□□□ 0.5
NR1H4Q96RI1 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 AC131281.2-201ENST00000520478 145 ntBASIC18.17■□□□□ 0.5
NR1H4Q96RI1 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 AC061975.6-201ENST00000579045 1553 ntBASIC18.17■□□□□ 0.5
NR1H4Q96RI1 AC084018.2-201ENST00000613093 2607 ntBASIC18.17■□□□□ 0.5
NR1H4Q96RI1 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NR1H4Q96RI1 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 AC126763.1-201ENST00000552015 2118 ntBASIC18.16■□□□□ 0.5
NR1H4Q96RI1 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 AL138724.1-201ENST00000606771 1088 ntBASIC18.16■□□□□ 0.5
NR1H4Q96RI1 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.16■□□□□ 0.5
NR1H4Q96RI1 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 AC009237.3-201ENST00000393279 1427 ntBASIC18.15■□□□□ 0.5
NR1H4Q96RI1 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
NR1H4Q96RI1 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
NR1H4Q96RI1 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
NR1H4Q96RI1 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
NR1H4Q96RI1 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NR1H4Q96RI1 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
NR1H4Q96RI1 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NR1H4Q96RI1 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NR1H4Q96RI1 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.14■□□□□ 0.49
NR1H4Q96RI1 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NR1H4Q96RI1 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NR1H4Q96RI1 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NR1H4Q96RI1 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
NR1H4Q96RI1 SLC47A1P1-202ENST00000449666 945 ntBASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms