Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AL031985.4-201ENST00000642138 673 ntBASIC18.6■□□□□ 0.57
CLIP3Q96DZ5 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.6■□□□□ 0.57
CLIP3Q96DZ5 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
CLIP3Q96DZ5 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.6■□□□□ 0.57
CLIP3Q96DZ5 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.6■□□□□ 0.57
CLIP3Q96DZ5 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CLIP3Q96DZ5 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLIP3Q96DZ5 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.6■□□□□ 0.57
CLIP3Q96DZ5 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLIP3Q96DZ5 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.6■□□□□ 0.57
CLIP3Q96DZ5 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLIP3Q96DZ5 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 RBM17P1-201ENST00000453646 1190 ntBASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLIP3Q96DZ5 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLIP3Q96DZ5 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CLIP3Q96DZ5 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLIP3Q96DZ5 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLIP3Q96DZ5 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLIP3Q96DZ5 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLIP3Q96DZ5 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.58■□□□□ 0.57
CLIP3Q96DZ5 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLIP3Q96DZ5 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.58■□□□□ 0.57
CLIP3Q96DZ5 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLIP3Q96DZ5 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLIP3Q96DZ5 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.58■□□□□ 0.56
CLIP3Q96DZ5 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.58■□□□□ 0.56
CLIP3Q96DZ5 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLIP3Q96DZ5 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
CLIP3Q96DZ5 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLIP3Q96DZ5 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
CLIP3Q96DZ5 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 AC106820.2-201ENST00000563775 3264 ntBASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 AP000525.1-201ENST00000608286 694 ntBASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLIP3Q96DZ5 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 MIR1238-201ENST00000408483 83 ntBASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 KRT18P21-201ENST00000515767 1272 ntBASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 AL445675.2-201ENST00000620291 557 ntBASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
CLIP3Q96DZ5 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms