Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLHC1Q8NHS4 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.52■□□□□ 0.56
CLHC1Q8NHS4 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.52■□□□□ 0.56
CLHC1Q8NHS4 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
CLHC1Q8NHS4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLHC1Q8NHS4 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLHC1Q8NHS4 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CLHC1Q8NHS4 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CLHC1Q8NHS4 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.52■□□□□ 0.55
CLHC1Q8NHS4 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CLHC1Q8NHS4 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.52■□□□□ 0.55
CLHC1Q8NHS4 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CLHC1Q8NHS4 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
CLHC1Q8NHS4 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
CLHC1Q8NHS4 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 SDHAP1-207ENST00000440850 2000 ntBASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 AP006587.1-201ENST00000534129 1502 ntBASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLHC1Q8NHS4 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 SOX15-203ENST00000570788 1093 ntBASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 AC060766.5-201ENST00000590539 871 ntBASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 AL109923.1-201ENST00000618799 583 ntBASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 AL121906.2-201ENST00000621597 723 ntBASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 AC141586.3-201ENST00000562166 1838 ntBASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.5■□□□□ 0.55
CLHC1Q8NHS4 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 AC092666.2-201ENST00000613287 246 ntBASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.49■□□□□ 0.55
CLHC1Q8NHS4 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.48■□□□□ 0.55
CLHC1Q8NHS4 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms