Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 YBX1P4-201ENST00000392794 808 ntBASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 RBM38-205ENST00000440234 686 ntTSL 2 BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 GNAS-203ENST00000306120 1878 ntBASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 FLJ38576-201ENST00000623820 2459 ntBASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 AC055733.4-201ENST00000638462 1354 ntBASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 MIR4508-201ENST00000584178 70 ntBASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 AC010980.1-201ENST00000587192 1142 ntBASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CLRN3Q8NCR9 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 NKILA-202ENST00000614771 2598 ntBASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC15.4■□□□□ 0.06
CLRN3Q8NCR9 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 AC009102.2-201ENST00000606772 1639 ntBASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 VGF-203ENST00000611537 1622 ntTSL 5 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 AC010141.3-201ENST00000456659 717 ntBASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 AL645608.8-201ENST00000606034 2086 ntBASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLRN3Q8NCR9 AC011676.5-201ENST00000624864 2660 ntBASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms