Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC098590.1-201ENST00000468126 897 ntBASIC17.07■□□□□ 0.32
SKA3Q8IX90 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.07■□□□□ 0.32
SKA3Q8IX90 AC142381.4-202ENST00000563973 229 ntBASIC17.07■□□□□ 0.32
SKA3Q8IX90 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.07■□□□□ 0.32
SKA3Q8IX90 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SKA3Q8IX90 FAM197Y4-202ENST00000622692 608 ntBASIC17.07■□□□□ 0.32
SKA3Q8IX90 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.07■□□□□ 0.32
SKA3Q8IX90 TMEM191A-211ENST00000637163 1067 ntBASIC17.07■□□□□ 0.32
SKA3Q8IX90 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SKA3Q8IX90 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.07■□□□□ 0.32
SKA3Q8IX90 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.07■□□□□ 0.32
SKA3Q8IX90 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SKA3Q8IX90 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SKA3Q8IX90 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SKA3Q8IX90 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SKA3Q8IX90 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SKA3Q8IX90 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.06■□□□□ 0.32
SKA3Q8IX90 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SKA3Q8IX90 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.06■□□□□ 0.32
SKA3Q8IX90 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SKA3Q8IX90 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
SKA3Q8IX90 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SKA3Q8IX90 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
SKA3Q8IX90 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SKA3Q8IX90 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SKA3Q8IX90 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SKA3Q8IX90 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SKA3Q8IX90 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SKA3Q8IX90 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.06■□□□□ 0.32
SKA3Q8IX90 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SKA3Q8IX90 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
SKA3Q8IX90 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
SKA3Q8IX90 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SKA3Q8IX90 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.06■□□□□ 0.32
SKA3Q8IX90 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SKA3Q8IX90 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.06■□□□□ 0.32
SKA3Q8IX90 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SKA3Q8IX90 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SKA3Q8IX90 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SKA3Q8IX90 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.06■□□□□ 0.32
SKA3Q8IX90 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SKA3Q8IX90 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SKA3Q8IX90 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.05■□□□□ 0.32
SKA3Q8IX90 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SKA3Q8IX90 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.05■□□□□ 0.32
SKA3Q8IX90 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.05■□□□□ 0.32
SKA3Q8IX90 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.05■□□□□ 0.32
SKA3Q8IX90 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.05■□□□□ 0.32
SKA3Q8IX90 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.05■□□□□ 0.32
SKA3Q8IX90 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.05■□□□□ 0.32
SKA3Q8IX90 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.05■□□□□ 0.32
SKA3Q8IX90 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.05■□□□□ 0.32
SKA3Q8IX90 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SKA3Q8IX90 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.05■□□□□ 0.32
SKA3Q8IX90 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.05■□□□□ 0.32
SKA3Q8IX90 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
SKA3Q8IX90 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SKA3Q8IX90 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SKA3Q8IX90 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.04■□□□□ 0.32
SKA3Q8IX90 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SKA3Q8IX90 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SKA3Q8IX90 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SKA3Q8IX90 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SKA3Q8IX90 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SKA3Q8IX90 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SKA3Q8IX90 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
SKA3Q8IX90 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.04■□□□□ 0.32
SKA3Q8IX90 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SKA3Q8IX90 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.04■□□□□ 0.32
SKA3Q8IX90 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.04■□□□□ 0.32
SKA3Q8IX90 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SKA3Q8IX90 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SKA3Q8IX90 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.04■□□□□ 0.32
SKA3Q8IX90 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
SKA3Q8IX90 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.04■□□□□ 0.32
SKA3Q8IX90 GCSHP5-201ENST00000443090 522 ntBASIC17.04■□□□□ 0.32
SKA3Q8IX90 AL158047.1-201ENST00000445918 881 ntBASIC17.04■□□□□ 0.32
SKA3Q8IX90 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.04■□□□□ 0.32
SKA3Q8IX90 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
SKA3Q8IX90 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.04■□□□□ 0.32
SKA3Q8IX90 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SKA3Q8IX90 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SKA3Q8IX90 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms