Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 AC133552.2-202ENST00000575694 574 ntBASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.48■□□□□ 0.55
PPP4R4Q6NUP7 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 BX276092.2-201ENST00000417668 665 ntBASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PPP4R4Q6NUP7 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 AL138781.1-201ENST00000566567 1274 ntBASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.46■□□□□ 0.55
PPP4R4Q6NUP7 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
PPP4R4Q6NUP7 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
PPP4R4Q6NUP7 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 AL355472.2-201ENST00000422958 438 ntBASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.45■□□□□ 0.54
PPP4R4Q6NUP7 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms