Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.62■□□□□ 0.73
USP39Q53GS9 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP39Q53GS9 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP39Q53GS9 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
USP39Q53GS9 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP39Q53GS9 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP39Q53GS9 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP39Q53GS9 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.61■□□□□ 0.73
USP39Q53GS9 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
USP39Q53GS9 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
USP39Q53GS9 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
USP39Q53GS9 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.61■□□□□ 0.73
USP39Q53GS9 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
USP39Q53GS9 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
USP39Q53GS9 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 SLC25A1P2-201ENST00000430693 912 ntBASIC19.61■□□□□ 0.73
USP39Q53GS9 MFAP1P1-201ENST00000442257 1255 ntBASIC19.61■□□□□ 0.73
USP39Q53GS9 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.61■□□□□ 0.73
USP39Q53GS9 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.61■□□□□ 0.73
USP39Q53GS9 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
USP39Q53GS9 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.61■□□□□ 0.73
USP39Q53GS9 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.61■□□□□ 0.73
USP39Q53GS9 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.61■□□□□ 0.73
USP39Q53GS9 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP39Q53GS9 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
USP39Q53GS9 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.6■□□□□ 0.73
USP39Q53GS9 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.6■□□□□ 0.73
USP39Q53GS9 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
USP39Q53GS9 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
USP39Q53GS9 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 FAM8A6P-201ENST00000407496 1135 ntBASIC19.6■□□□□ 0.73
USP39Q53GS9 FAM207BP-201ENST00000447172 505 ntBASIC19.6■□□□□ 0.73
USP39Q53GS9 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.6■□□□□ 0.73
USP39Q53GS9 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.6■□□□□ 0.73
USP39Q53GS9 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.6■□□□□ 0.73
USP39Q53GS9 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.6■□□□□ 0.73
USP39Q53GS9 AC139887.4-201ENST00000607877 719 ntBASIC19.6■□□□□ 0.73
USP39Q53GS9 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
USP39Q53GS9 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
USP39Q53GS9 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
USP39Q53GS9 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.6■□□□□ 0.73
USP39Q53GS9 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
USP39Q53GS9 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.6■□□□□ 0.73
USP39Q53GS9 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP39Q53GS9 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.6■□□□□ 0.73
USP39Q53GS9 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP39Q53GS9 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.59■□□□□ 0.73
USP39Q53GS9 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP39Q53GS9 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP39Q53GS9 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP39Q53GS9 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP39Q53GS9 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.59■□□□□ 0.73
USP39Q53GS9 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP39Q53GS9 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.59■□□□□ 0.73
USP39Q53GS9 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.59■□□□□ 0.73
USP39Q53GS9 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP39Q53GS9 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.59■□□□□ 0.73
USP39Q53GS9 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
USP39Q53GS9 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.59■□□□□ 0.73
USP39Q53GS9 AC092647.4-201ENST00000457211 535 ntBASIC19.59■□□□□ 0.73
USP39Q53GS9 AC091390.4-202ENST00000476426 537 ntBASIC19.59■□□□□ 0.73
USP39Q53GS9 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP39Q53GS9 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.59■□□□□ 0.73
USP39Q53GS9 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
USP39Q53GS9 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.59■□□□□ 0.73
USP39Q53GS9 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP39Q53GS9 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP39Q53GS9 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms