Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC15.7■□□□□ 0.1
CDX1P47902 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.7■□□□□ 0.1
CDX1P47902 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC15.7■□□□□ 0.1
CDX1P47902 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC15.7■□□□□ 0.1
CDX1P47902 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 AC020763.4-201ENST00000623414 4170 ntBASIC15.7■□□□□ 0.1
CDX1P47902 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CDX1P47902 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CDX1P47902 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CDX1P47902 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC15.7■□□□□ 0.1
CDX1P47902 AC006058.3-201ENST00000606217 1069 ntBASIC15.7■□□□□ 0.1
CDX1P47902 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
CDX1P47902 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC15.7■□□□□ 0.1
CDX1P47902 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC15.69■□□□□ 0.1
CDX1P47902 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC15.69■□□□□ 0.1
CDX1P47902 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
CDX1P47902 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
CDX1P47902 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC15.69■□□□□ 0.1
CDX1P47902 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CDX1P47902 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CDX1P47902 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 GGT1-206ENST00000404223 952 ntTSL 2 BASIC15.69■□□□□ 0.1
CDX1P47902 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CDX1P47902 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
CDX1P47902 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC15.69■□□□□ 0.1
CDX1P47902 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC15.69■□□□□ 0.1
CDX1P47902 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CDX1P47902 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CDX1P47902 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC15.69■□□□□ 0.1
CDX1P47902 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC15.69■□□□□ 0.1
CDX1P47902 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
CDX1P47902 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CDX1P47902 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC15.68■□□□□ 0.1
CDX1P47902 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC15.68■□□□□ 0.1
CDX1P47902 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC15.68■□□□□ 0.1
CDX1P47902 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 AL390719.1-204ENST00000412397 1219 ntBASIC15.68■□□□□ 0.1
CDX1P47902 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CDX1P47902 KRT17P3-201ENST00000420566 1262 ntBASIC15.68■□□□□ 0.1
CDX1P47902 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC15.68■□□□□ 0.1
CDX1P47902 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC15.68■□□□□ 0.1
CDX1P47902 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC15.68■□□□□ 0.1
CDX1P47902 AC008403.3-201ENST00000598924 454 ntBASIC15.68■□□□□ 0.1
CDX1P47902 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC15.68■□□□□ 0.1
CDX1P47902 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CDX1P47902 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC15.68■□□□□ 0.1
CDX1P47902 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms