Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.83■□□□□ 0.44
NKX2-2O95096 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.83■□□□□ 0.44
NKX2-2O95096 FAM197Y4-202ENST00000622692 608 ntBASIC17.83■□□□□ 0.44
NKX2-2O95096 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-2O95096 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.83■□□□□ 0.44
NKX2-2O95096 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-2O95096 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
NKX2-2O95096 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
NKX2-2O95096 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-2O95096 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.83■□□□□ 0.44
NKX2-2O95096 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
NKX2-2O95096 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-2O95096 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-2O95096 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-2O95096 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-2O95096 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
NKX2-2O95096 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.83■□□□□ 0.44
NKX2-2O95096 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-2O95096 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX2-2O95096 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX2-2O95096 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX2-2O95096 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX2-2O95096 AC018445.3-201ENST00000624177 1945 ntBASIC17.82■□□□□ 0.44
NKX2-2O95096 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-2O95096 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.82■□□□□ 0.44
NKX2-2O95096 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX2-2O95096 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-2O95096 AL353807.1-201ENST00000427475 662 ntBASIC17.82■□□□□ 0.44
NKX2-2O95096 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
NKX2-2O95096 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.82■□□□□ 0.44
NKX2-2O95096 AC098590.1-201ENST00000468126 897 ntBASIC17.82■□□□□ 0.44
NKX2-2O95096 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-2O95096 AP002982.1-201ENST00000492365 877 ntBASIC17.82■□□□□ 0.44
NKX2-2O95096 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.82■□□□□ 0.44
NKX2-2O95096 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.82■□□□□ 0.44
NKX2-2O95096 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX2-2O95096 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-2O95096 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-2O95096 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-2O95096 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-2O95096 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX2-2O95096 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-2O95096 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.82■□□□□ 0.44
NKX2-2O95096 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX2-2O95096 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX2-2O95096 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX2-2O95096 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.81■□□□□ 0.44
NKX2-2O95096 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
NKX2-2O95096 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX2-2O95096 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX2-2O95096 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX2-2O95096 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.81■□□□□ 0.44
NKX2-2O95096 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX2-2O95096 KSR1P1-201ENST00000446298 240 ntBASIC17.81■□□□□ 0.44
NKX2-2O95096 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.81■□□□□ 0.44
NKX2-2O95096 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX2-2O95096 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.81■□□□□ 0.44
NKX2-2O95096 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.81■□□□□ 0.44
NKX2-2O95096 AC142381.4-202ENST00000563973 229 ntBASIC17.81■□□□□ 0.44
NKX2-2O95096 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.81■□□□□ 0.44
NKX2-2O95096 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX2-2O95096 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
NKX2-2O95096 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX2-2O95096 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX2-2O95096 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX2-2O95096 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX2-2O95096 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.81■□□□□ 0.44
NKX2-2O95096 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.8■□□□□ 0.44
NKX2-2O95096 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.8■□□□□ 0.44
NKX2-2O95096 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.8■□□□□ 0.44
NKX2-2O95096 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
NKX2-2O95096 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.8■□□□□ 0.44
NKX2-2O95096 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 GCSHP5-201ENST00000443090 522 ntBASIC17.8■□□□□ 0.44
NKX2-2O95096 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.8■□□□□ 0.44
NKX2-2O95096 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.8■□□□□ 0.44
NKX2-2O95096 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.8■□□□□ 0.44
NKX2-2O95096 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.8■□□□□ 0.44
NKX2-2O95096 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.8■□□□□ 0.44
NKX2-2O95096 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.8■□□□□ 0.44
NKX2-2O95096 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.8■□□□□ 0.44
NKX2-2O95096 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
NKX2-2O95096 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.8■□□□□ 0.44
NKX2-2O95096 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX2-2O95096 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.79■□□□□ 0.44
NKX2-2O95096 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms