Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.46■□□□□ 0.39
SSX4O60224 AC060766.5-201ENST00000590539 871 ntBASIC17.46■□□□□ 0.39
SSX4O60224 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SSX4O60224 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SSX4O60224 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SSX4O60224 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SSX4O60224 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SSX4O60224 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SSX4O60224 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
SSX4O60224 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SSX4O60224 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.38
SSX4O60224 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.46■□□□□ 0.38
SSX4O60224 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SSX4O60224 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 AL691432.2-201ENST00000607222 2038 ntBASIC17.45■□□□□ 0.38
SSX4O60224 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.45■□□□□ 0.38
SSX4O60224 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
SSX4O60224 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SSX4O60224 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SSX4O60224 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 KRT18P68-201ENST00000392293 1000 ntBASIC17.45■□□□□ 0.38
SSX4O60224 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SSX4O60224 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.45■□□□□ 0.38
SSX4O60224 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.45■□□□□ 0.38
SSX4O60224 RPS2P4-201ENST00000476944 856 ntBASIC17.45■□□□□ 0.38
SSX4O60224 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.45■□□□□ 0.38
SSX4O60224 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.45■□□□□ 0.38
SSX4O60224 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
SSX4O60224 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SSX4O60224 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSX4O60224 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSX4O60224 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
SSX4O60224 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
SSX4O60224 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
SSX4O60224 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSX4O60224 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SSX4O60224 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SSX4O60224 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSX4O60224 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SSX4O60224 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.44■□□□□ 0.38
SSX4O60224 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.44■□□□□ 0.38
SSX4O60224 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.44■□□□□ 0.38
SSX4O60224 HLA-B-256ENST00000639848 1089 ntBASIC17.44■□□□□ 0.38
SSX4O60224 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSX4O60224 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SSX4O60224 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSX4O60224 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSX4O60224 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSX4O60224 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SSX4O60224 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
SSX4O60224 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSX4O60224 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SSX4O60224 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
SSX4O60224 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SSX4O60224 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSX4O60224 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.43■□□□□ 0.38
SSX4O60224 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSX4O60224 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SSX4O60224 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.43■□□□□ 0.38
SSX4O60224 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
SSX4O60224 PTPA-214ENST00000423100 988 ntTSL 2 BASIC17.43■□□□□ 0.38
SSX4O60224 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.43■□□□□ 0.38
SSX4O60224 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.43■□□□□ 0.38
SSX4O60224 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSX4O60224 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSX4O60224 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.43■□□□□ 0.38
SSX4O60224 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSX4O60224 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
SSX4O60224 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
SSX4O60224 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSX4O60224 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSX4O60224 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSX4O60224 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.43■□□□□ 0.38
SSX4O60224 TMEM179-206ENST00000616017 1645 ntBASIC17.43■□□□□ 0.38
SSX4O60224 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSX4O60224 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.43■□□□□ 0.38
SSX4O60224 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSX4O60224 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SSX4O60224 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
SSX4O60224 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SSX4O60224 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SSX4O60224 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SSX4O60224 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.42■□□□□ 0.38
SSX4O60224 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.42■□□□□ 0.38
SSX4O60224 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.42■□□□□ 0.38
SSX4O60224 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SSX4O60224 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms