Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 LINC00558-201ENST00000569422 3163 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HOXD11P31277 NELL2-217ENST00000551601 3148 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HOXD11P31277 ATL3-201ENST00000398868 7135 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
HOXD11P31277 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC8.64□□□□□ -1.03
HOXD11P31277 CSMD2-205ENST00000373381 13698 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
HOXD11P31277 NSUN7-201ENST00000316607 3546 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HOXD11P31277 EYA4-203ENST00000367895 5699 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
HOXD11P31277 SRGAP2-217ENST00000624873 4705 ntAPPRIS ALT1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HOXD11P31277 MAGI1-IT1-201ENST00000460754 2567 ntTSL 2 BASIC8.64□□□□□ -1.03
HOXD11P31277 MIR367-201ENST00000362299 68 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 RNA5SP188-201ENST00000362916 129 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 RNU6-1167P-201ENST00000363227 94 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 RNY1P10-201ENST00000363268 113 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 Y_RNA.179-201ENST00000363844 90 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
HOXD11P31277 AL603914.1-201ENST00000401964 204 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 SNX18P13-201ENST00000412442 529 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 HNRNPCP7-201ENST00000456056 905 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 RN7SL749P-201ENST00000460421 290 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 RPL31P13-201ENST00000484151 370 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 AC091868.1-201ENST00000508746 304 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC8.64□□□□□ -1.03
HOXD11P31277 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC8.64□□□□□ -1.03
HOXD11P31277 LGALS9DP-201ENST00000580112 764 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 RPL30P11-203ENST00000598995 310 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 LINC02019-202ENST00000609204 845 ntTSL 2 BASIC8.64□□□□□ -1.03
HOXD11P31277 FAM30B-201ENST00000611556 397 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 AL121985.3-201ENST00000620690 523 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC8.64□□□□□ -1.03
HOXD11P31277 ATXN1-202ENST00000436367 10587 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HOXD11P31277 AC062022.1-201ENST00000451026 1684 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 AKAP3-206ENST00000545990 3318 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.03
HOXD11P31277 NBPF20-204ENST00000620821 2051 ntTSL 5 BASIC8.64□□□□□ -1.03
HOXD11P31277 ACKR2-202ENST00000442925 2879 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HOXD11P31277 IKZF2-202ENST00000374319 2001 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HOXD11P31277 NLRP3-203ENST00000366496 3996 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HOXD11P31277 AL133243.4-201ENST00000623116 3109 ntBASIC8.64□□□□□ -1.03
HOXD11P31277 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HOXD11P31277 PPFIBP1-207ENST00000537927 5719 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HOXD11P31277 ABCB1-210ENST00000543898 4524 ntTSL 5 BASIC8.64□□□□□ -1.03
HOXD11P31277 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HOXD11P31277 AFF1-211ENST00000544085 3644 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.03
HOXD11P31277 SEPT6-203ENST00000354416 4652 ntAPPRIS ALT1 TSL 5 BASIC8.63□□□□□ -1.03
HOXD11P31277 KIAA1217-207ENST00000396445 5706 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HOXD11P31277 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HOXD11P31277 NEMP1-201ENST00000300128 5590 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HOXD11P31277 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HOXD11P31277 SMIM31-201ENST00000507311 3123 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HOXD11P31277 RUNX1T1-250ENST00000614812 7483 ntAPPRIS P3 TSL 5 BASIC8.63□□□□□ -1.03
HOXD11P31277 BUB1B-201ENST00000287598 3725 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HOXD11P31277 SAGE4P-201ENST00000442271 3381 ntBASIC8.63□□□□□ -1.03
HOXD11P31277 SLC25A44-202ENST00000423538 3662 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HOXD11P31277 ADAMTS12-201ENST00000352040 4622 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
HOXD11P31277 ZFHX3-203ENST00000397992 13841 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HOXD11P31277 CXorf57-202ENST00000372548 3861 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HOXD11P31277 AMELY-202ENST00000383036 621 ntTSL 5 BASIC8.63□□□□□ -1.03
HOXD11P31277 RPS3P2-201ENST00000421346 701 ntBASIC8.63□□□□□ -1.03
HOXD11P31277 SNX18P14-201ENST00000429308 574 ntBASIC8.63□□□□□ -1.03
HOXD11P31277 OR10G8-201ENST00000431524 1045 ntAPPRIS P1 BASIC8.63□□□□□ -1.03
HOXD11P31277 AC112220.1-201ENST00000434628 355 ntBASIC8.63□□□□□ -1.03
HOXD11P31277 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC8.63□□□□□ -1.03
HOXD11P31277 RN7SL228P-201ENST00000470060 303 ntBASIC8.63□□□□□ -1.03
HOXD11P31277 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC8.63□□□□□ -1.03
HOXD11P31277 RNU7-179P-201ENST00000516608 68 ntBASIC8.63□□□□□ -1.03
HOXD11P31277 AC120036.4-201ENST00000521874 256 ntBASIC8.63□□□□□ -1.03
HOXD11P31277 AC009806.1-201ENST00000526112 519 ntTSL 3 BASIC8.63□□□□□ -1.03
HOXD11P31277 AC018653.2-201ENST00000540190 238 ntBASIC8.63□□□□□ -1.03
HOXD11P31277 snoZ6.4-201ENST00000581669 55 ntBASIC8.63□□□□□ -1.03
HOXD11P31277 LINC01198-208ENST00000599175 560 ntTSL 5 BASIC8.63□□□□□ -1.03
HOXD11P31277 MIR8082-201ENST00000612488 81 ntBASIC8.63□□□□□ -1.03
HOXD11P31277 MIR2052-201ENST00000636055 55 ntBASIC8.63□□□□□ -1.03
HOXD11P31277 MYOF-201ENST00000358334 6680 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HOXD11P31277 CBWD1-204ENST00000377447 2513 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HOXD11P31277 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HOXD11P31277 C9orf72-206ENST00000619707 3339 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HOXD11P31277 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC8.63□□□□□ -1.03
HOXD11P31277 CCR6-203ENST00000400926 3216 ntAPPRIS P1 TSL 2 BASIC8.63□□□□□ -1.03
HOXD11P31277 ITSN2-213ENST00000622089 5805 ntTSL 5 BASIC8.63□□□□□ -1.03
HOXD11P31277 FOXP1-220ENST00000614176 6384 ntAPPRIS ALT1 TSL 2 BASIC8.63□□□□□ -1.03
HOXD11P31277 ATP12A-202ENST00000381946 4258 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HOXD11P31277 CHD2-201ENST00000394196 9363 ntAPPRIS P1 TSL 5 BASIC8.63□□□□□ -1.03
HOXD11P31277 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC8.62□□□□□ -1.03
HOXD11P31277 SVEP1-203ENST00000401783 12350 ntAPPRIS ALT2 TSL 5 BASIC8.62□□□□□ -1.03
HOXD11P31277 ZNF791-202ENST00000446165 6412 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 ZNF185-202ENST00000318529 3878 ntAPPRIS ALT2 TSL 2 BASIC8.62□□□□□ -1.03
HOXD11P31277 DNAH7-203ENST00000410072 1937 ntTSL 2 BASIC8.62□□□□□ -1.03
HOXD11P31277 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 UHRF1BP1-201ENST00000192788 9570 ntAPPRIS P2 TSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 CDH23-213ENST00000619887 4224 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 GNE-205ENST00000539815 3657 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 SEC24C-202ENST00000345254 4433 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 MID1-204ENST00000380782 3352 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 CYBRD1-201ENST00000321348 4365 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 MIR181C-201ENST00000384881 110 ntBASIC8.62□□□□□ -1.03
HOXD11P31277 TRBV25-1-202ENST00000390398 381 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
HOXD11P31277 AL512633.1-201ENST00000399931 655 ntBASIC8.62□□□□□ -1.03
HOXD11P31277 AL513331.1-201ENST00000411908 397 ntBASIC8.62□□□□□ -1.03
HOXD11P31277 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC8.62□□□□□ -1.03
HOXD11P31277 RN7SL168P-201ENST00000463821 279 ntBASIC8.62□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 314.2 ms