RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 NISCHQ9Y2I1 1504 aa18.07■□□□□ 0.48
LINC00558-201ENST00000569422 SHROOM4Q9ULL8 1493 aa15.73■□□□□ 0.11
LINC00558-201ENST00000569422 DCAF8L2P0C7V8 631 aa15.52■□□□□ 0.08
LINC00558-201ENST00000569422 SUPT5HO00267 1087 aaKnown RBP15.41■□□□□ 0.06
LINC00558-201ENST00000569422 ZCCHC6Q5VYS8 1495 aaKnown RBP15.22■□□□□ 0.03
LINC00558-201ENST00000569422 CCDC180Q9P1Z9 1646 aa15.2■□□□□ 0.02
LINC00558-201ENST00000569422 CHIC1Q5VXU3 224 aa14.75□□□□□ -0.05
LINC00558-201ENST00000569422 SLC24A1O60721 1099 aa14.69□□□□□ -0.06
LINC00558-201ENST00000569422 DCAF1Q9Y4B6 1507 aa14.65□□□□□ -0.06
LINC00558-201ENST00000569422 MYO15BQ96JP2 1530 aa14.61□□□□□ -0.07
LINC00558-201ENST00000569422 ABCC9O60706 1549 aa14.57□□□□□ -0.08
LINC00558-201ENST00000569422 SCRIBQ14160 1630 aa14.52□□□□□ -0.08
LINC00558-201ENST00000569422 LOC105371045A0A1W2PR82 267 aa14.46□□□□□ -0.09
LINC00558-201ENST00000569422 PCGF6Q9BYE7 350 aa14.35□□□□□ -0.11
LINC00558-201ENST00000569422 RSF1Q96T23 1441 aaPredicted RBP14.34□□□□□ -0.11
LINC00558-201ENST00000569422 EHMT2Q96KQ7 1210 aa14.32□□□□□ -0.12
LINC00558-201ENST00000569422 FAM9AQ8IZU1 332 aaPredicted RBP14.3□□□□□ -0.12
LINC00558-201ENST00000569422 TRIM41Q8WV44 630 aa14.26□□□□□ -0.13
LINC00558-201ENST00000569422 CECR2Q9BXF3 1484 aa14.23□□□□□ -0.13
LINC00558-201ENST00000569422 NACADO15069 1562 aa14.19□□□□□ -0.14
LINC00558-201ENST00000569422 RB1CC1Q8TDY2 1594 aa14.15□□□□□ -0.14
LINC00558-201ENST00000569422 HRCP23327 699 aa14.12□□□□□ -0.15
LINC00558-201ENST00000569422 MROH2BQ7Z745 1585 aa14.11□□□□□ -0.15
LINC00558-201ENST00000569422 MYT1Q01538 1121 aa14.08□□□□□ -0.16
LINC00558-201ENST00000569422 PABPN1Q86U42 306 aaKnown RBP eCLIP14.06□□□□□ -0.16
LINC00558-201ENST00000569422 PPARGC1BQ86YN6 1023 aaKnown RBP14.03□□□□□ -0.16
LINC00558-201ENST00000569422 WIZO95785 1651 aa14.01□□□□□ -0.17
LINC00558-201ENST00000569422 PELP1Q8IZL8 1130 aaKnown RBP13.99□□□□□ -0.17
LINC00558-201ENST00000569422 TRIM26Q12899 539 aaPredicted RBP13.95□□□□□ -0.18
LINC00558-201ENST00000569422 TTBK1Q5TCY1 1321 aaPredicted RBP13.89□□□□□ -0.19
LINC00558-201ENST00000569422 BAZ1AQ9NRL2 1556 aaPredicted RBP13.86□□□□□ -0.19
LINC00558-201ENST00000569422 PRKCSHP14314 528 aaPredicted RBP13.77□□□□□ -0.2
LINC00558-201ENST00000569422 CCDC88BA6NC98 1476 aa13.77□□□□□ -0.21
LINC00558-201ENST00000569422 ABCC8Q09428 1581 aa13.75□□□□□ -0.21
LINC00558-201ENST00000569422 SMARCA4P51532 1647 aa13.74□□□□□ -0.21
LINC00558-201ENST00000569422 TOP2AP11388 1531 aaKnown RBP13.71□□□□□ -0.21
LINC00558-201ENST00000569422 UNC13AQ9UPW8 1703 aa13.7□□□□□ -0.22
LINC00558-201ENST00000569422 DAXXQ9UER7 740 aaPredicted RBP13.67□□□□□ -0.22
LINC00558-201ENST00000569422 UBTFP17480 764 aaKnown RBP13.66□□□□□ -0.22
LINC00558-201ENST00000569422 SMARCA2P51531 1590 aa13.65□□□□□ -0.22
LINC00558-201ENST00000569422 APLP2Q06481 763 aa13.65□□□□□ -0.23
LINC00558-201ENST00000569422 SOGA1O94964 1423 aa13.64□□□□□ -0.23
LINC00558-201ENST00000569422 BICRAQ9NZM4 1560 aa13.63□□□□□ -0.23
LINC00558-201ENST00000569422 RANGAP1P46060 587 aaPredicted RBP13.6□□□□□ -0.23
LINC00558-201ENST00000569422 EIF4G1Q04637 1599 aaKnown RBP13.6□□□□□ -0.23
LINC00558-201ENST00000569422 CSRNP3Q8WYN3 585 aa13.59□□□□□ -0.23
LINC00558-201ENST00000569422 RUSC2Q8N2Y8 1516 aa13.58□□□□□ -0.24
LINC00558-201ENST00000569422 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.57□□□□□ -0.24
LINC00558-201ENST00000569422 ZEB1P37275 1124 aaPredicted RBP13.54□□□□□ -0.24
LINC00558-201ENST00000569422 WRNQ14191 1432 aaPredicted RBP eCLIP13.51□□□□□ -0.25
LINC00558-201ENST00000569422 CCER1Q8TC90 406 aaPredicted RBP13.5□□□□□ -0.25
LINC00558-201ENST00000569422 ATAD2BQ9ULI0 1458 aa13.5□□□□□ -0.25
LINC00558-201ENST00000569422 CEP162Q5TB80 1403 aa13.49□□□□□ -0.25
LINC00558-201ENST00000569422 BAZ1BQ9UIG0 1483 aaKnown RBP13.49□□□□□ -0.25
LINC00558-201ENST00000569422 ERICH6Q7L0X2 663 aa13.46□□□□□ -0.25
LINC00558-201ENST00000569422 TNIKQ9UKE5 1360 aa13.42□□□□□ -0.26
LINC00558-201ENST00000569422 EEA1Q15075 1411 aa13.37□□□□□ -0.27
LINC00558-201ENST00000569422 PEG3Q9GZU2 1588 aa13.37□□□□□ -0.27
LINC00558-201ENST00000569422 SYNJ1O43426 1573 aa13.37□□□□□ -0.27
LINC00558-201ENST00000569422 GOLGA3Q08378 1498 aa13.36□□□□□ -0.27
LINC00558-201ENST00000569422 HNRNPUL2Q1KMD3 747 aaKnown RBP13.34□□□□□ -0.27
LINC00558-201ENST00000569422 CEP164Q9UPV0 1460 aa13.28□□□□□ -0.28
LINC00558-201ENST00000569422 CLIP1P30622 1438 aa13.28□□□□□ -0.28
LINC00558-201ENST00000569422 RAPGEF2Q9Y4G8 1499 aa13.27□□□□□ -0.29
LINC00558-201ENST00000569422 NCAPD3P42695 1498 aa13.2□□□□□ -0.3
LINC00558-201ENST00000569422 VPS8Q8N3P4 1428 aa13.14□□□□□ -0.31
LINC00558-201ENST00000569422 KIF21BO75037 1637 aa13.14□□□□□ -0.31
LINC00558-201ENST00000569422 TOP2BQ02880 1626 aa13.14□□□□□ -0.31
LINC00558-201ENST00000569422 DIEXFQ68CQ4 756 aaKnown RBP13.12□□□□□ -0.31
LINC00558-201ENST00000569422 CUX1P39880 1505 aa13.11□□□□□ -0.31
LINC00558-201ENST00000569422 HMGXB3Q12766 1538 aa13.1□□□□□ -0.31
LINC00558-201ENST00000569422 KANK4Q5T7N3 995 aaPredicted RBP13.1□□□□□ -0.31
LINC00558-201ENST00000569422 ITGAEP38570 1179 aa13.09□□□□□ -0.31
LINC00558-201ENST00000569422 KIF27Q86VH2 1401 aa13.09□□□□□ -0.31
LINC00558-201ENST00000569422 CFTRP13569 1480 aa13.08□□□□□ -0.32
LINC00558-201ENST00000569422 ATP1B4Q9UN42 357 aaPredicted RBP13.07□□□□□ -0.32
LINC00558-201ENST00000569422 P3H3Q8IVL6 736 aa13.06□□□□□ -0.32
LINC00558-201ENST00000569422 PRXQ9BXM0 1461 aa13.05□□□□□ -0.32
LINC00558-201ENST00000569422 CADPSQ9ULU8 1353 aa13.04□□□□□ -0.32
LINC00558-201ENST00000569422 CUX2O14529 1486 aa13.03□□□□□ -0.32
LINC00558-201ENST00000569422 NCBP3Q53F19 620 aaKnown RBP13.03□□□□□ -0.32
LINC00558-201ENST00000569422 BIVM-ERCC5R4GMW8 1640 aa13.03□□□□□ -0.32
LINC00558-201ENST00000569422 ZNF316A6NFI3 1004 aaPredicted RBP13.01□□□□□ -0.33
LINC00558-201ENST00000569422 SCAF1Q9H7N4 1312 aaKnown RBP13□□□□□ -0.33
LINC00558-201ENST00000569422 ARAP1Q96P48 1450 aa13□□□□□ -0.33
LINC00558-201ENST00000569422 IGF1RP08069 1367 aa12.98□□□□□ -0.33
LINC00558-201ENST00000569422 YTHDC1Q96MU7 727 aaKnown RBP12.97□□□□□ -0.33
LINC00558-201ENST00000569422 ERICH3Q5RHP9 1530 aa12.95□□□□□ -0.34
LINC00558-201ENST00000569422 CARMIL1Q5VZK9 1371 aa12.95□□□□□ -0.34
LINC00558-201ENST00000569422 CC2D2AQ9P2K1 1620 aa12.95□□□□□ -0.34
LINC00558-201ENST00000569422 NEUROD1Q13562 356 aa12.95□□□□□ -0.34
LINC00558-201ENST00000569422 FGD5Q6ZNL6 1462 aa12.94□□□□□ -0.34
LINC00558-201ENST00000569422 DNAJC5BQ9UF47 199 aa12.93□□□□□ -0.34
LINC00558-201ENST00000569422 PLPPR3Q6T4P5 718 aa12.93□□□□□ -0.34
LINC00558-201ENST00000569422 ARHGAP35Q9NRY4 1499 aa12.92□□□□□ -0.34
LINC00558-201ENST00000569422 NESP48681 1621 aa12.92□□□□□ -0.34
LINC00558-201ENST00000569422 FANCD2Q9BXW9 1451 aa12.91□□□□□ -0.34
LINC00558-201ENST00000569422 RAD54L2Q9Y4B4 1467 aa12.9□□□□□ -0.34
LINC00558-201ENST00000569422 ACIN1Q9UKV3 1341 aaKnown RBP12.89□□□□□ -0.35
LINC00558-201ENST00000569422 FAM50AQ14320 339 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 367.6 ms