Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 WWOX-216ENST00000569818 525 ntBASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 AC087388.1-201ENST00000571370 1112 ntBASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 FAM87A-204ENST00000613235 858 ntBASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 SMG8-203ENST00000578922 2178 ntBASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 AL391422.3-201ENST00000603791 2761 ntBASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 AC004951.3-201ENST00000418645 1148 ntBASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 AC008040.2-201ENST00000461049 708 ntBASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TM9SF3Q9HD45 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.33■□□□□ 0.69
TM9SF3Q9HD45 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TM9SF3Q9HD45 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TM9SF3Q9HD45 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
TM9SF3Q9HD45 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TM9SF3Q9HD45 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TM9SF3Q9HD45 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
TM9SF3Q9HD45 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TM9SF3Q9HD45 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
TM9SF3Q9HD45 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TM9SF3Q9HD45 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.33■□□□□ 0.68
TM9SF3Q9HD45 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
TM9SF3Q9HD45 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TM9SF3Q9HD45 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TM9SF3Q9HD45 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.33■□□□□ 0.68
TM9SF3Q9HD45 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.33■□□□□ 0.68
TM9SF3Q9HD45 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TM9SF3Q9HD45 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TM9SF3Q9HD45 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TM9SF3Q9HD45 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TM9SF3Q9HD45 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.31■□□□□ 0.68
TM9SF3Q9HD45 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TM9SF3Q9HD45 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.31■□□□□ 0.68
TM9SF3Q9HD45 AFG3L1P-217ENST00000557444 2447 ntBASIC19.31■□□□□ 0.68
TM9SF3Q9HD45 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TM9SF3Q9HD45 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TM9SF3Q9HD45 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms