Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.75■□□□□ 0.43
TIMP4Q99727 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
TIMP4Q99727 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.75■□□□□ 0.43
TIMP4Q99727 PHGDH-210ENST00000641115 1638 ntBASIC17.75■□□□□ 0.43
TIMP4Q99727 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TIMP4Q99727 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC17.75■□□□□ 0.43
TIMP4Q99727 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
TIMP4Q99727 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
TIMP4Q99727 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TIMP4Q99727 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.74■□□□□ 0.43
TIMP4Q99727 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
TIMP4Q99727 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
TIMP4Q99727 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TIMP4Q99727 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC17.74■□□□□ 0.43
TIMP4Q99727 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TIMP4Q99727 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.74■□□□□ 0.43
TIMP4Q99727 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TIMP4Q99727 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.74■□□□□ 0.43
TIMP4Q99727 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC17.74■□□□□ 0.43
TIMP4Q99727 CD177P1-201ENST00000606252 935 ntBASIC17.74■□□□□ 0.43
TIMP4Q99727 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.74■□□□□ 0.43
TIMP4Q99727 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TIMP4Q99727 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TIMP4Q99727 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TIMP4Q99727 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TIMP4Q99727 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
TIMP4Q99727 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.74■□□□□ 0.43
TIMP4Q99727 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.73■□□□□ 0.43
TIMP4Q99727 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.73■□□□□ 0.43
TIMP4Q99727 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TIMP4Q99727 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
TIMP4Q99727 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
TIMP4Q99727 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.73■□□□□ 0.43
TIMP4Q99727 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TIMP4Q99727 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.73■□□□□ 0.43
TIMP4Q99727 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.73■□□□□ 0.43
TIMP4Q99727 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TIMP4Q99727 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.73■□□□□ 0.43
TIMP4Q99727 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
TIMP4Q99727 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TIMP4Q99727 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.73■□□□□ 0.43
TIMP4Q99727 AP002982.1-201ENST00000492365 877 ntBASIC17.73■□□□□ 0.43
TIMP4Q99727 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.73■□□□□ 0.43
TIMP4Q99727 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.73■□□□□ 0.43
TIMP4Q99727 AC073195.1-201ENST00000607241 877 ntBASIC17.73■□□□□ 0.43
TIMP4Q99727 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TIMP4Q99727 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.73■□□□□ 0.43
TIMP4Q99727 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TIMP4Q99727 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.73■□□□□ 0.43
TIMP4Q99727 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.72■□□□□ 0.43
TIMP4Q99727 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.72■□□□□ 0.43
TIMP4Q99727 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.72■□□□□ 0.43
TIMP4Q99727 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.72■□□□□ 0.43
TIMP4Q99727 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.72■□□□□ 0.43
TIMP4Q99727 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
TIMP4Q99727 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TIMP4Q99727 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TIMP4Q99727 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.72■□□□□ 0.43
TIMP4Q99727 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
TIMP4Q99727 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
TIMP4Q99727 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.72■□□□□ 0.43
TIMP4Q99727 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
TIMP4Q99727 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.72■□□□□ 0.43
TIMP4Q99727 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.72■□□□□ 0.43
TIMP4Q99727 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.72■□□□□ 0.43
TIMP4Q99727 AL353708.3-201ENST00000610272 989 ntBASIC17.72■□□□□ 0.43
TIMP4Q99727 REXO1L12P-201ENST00000622156 912 ntBASIC17.72■□□□□ 0.43
TIMP4Q99727 AC073912.3-201ENST00000624414 853 ntBASIC17.72■□□□□ 0.43
TIMP4Q99727 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
TIMP4Q99727 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
TIMP4Q99727 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.72■□□□□ 0.43
TIMP4Q99727 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TIMP4Q99727 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TIMP4Q99727 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
TIMP4Q99727 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TIMP4Q99727 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.71■□□□□ 0.43
TIMP4Q99727 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TIMP4Q99727 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TIMP4Q99727 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.71■□□□□ 0.43
TIMP4Q99727 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.71■□□□□ 0.43
TIMP4Q99727 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
TIMP4Q99727 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
TIMP4Q99727 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms