Protein–RNA interactions for Protein: Q96AA3

RFT1, Protein RFT1 homolog, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1Q96AA3 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
RFT1Q96AA3 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
RFT1Q96AA3 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFT1Q96AA3 MCRIP2P1-201ENST00000394346 511 ntBASIC17.11■□□□□ 0.33
RFT1Q96AA3 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.11■□□□□ 0.33
RFT1Q96AA3 CNN2P6-201ENST00000439038 900 ntBASIC17.11■□□□□ 0.33
RFT1Q96AA3 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
RFT1Q96AA3 RARRES2P4-201ENST00000514074 484 ntBASIC17.11■□□□□ 0.33
RFT1Q96AA3 DUX4L16-201ENST00000555130 1264 ntBASIC17.11■□□□□ 0.33
RFT1Q96AA3 AL162412.1-201ENST00000567129 965 ntBASIC17.11■□□□□ 0.33
RFT1Q96AA3 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RFT1Q96AA3 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RFT1Q96AA3 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFT1Q96AA3 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
RFT1Q96AA3 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFT1Q96AA3 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFT1Q96AA3 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFT1Q96AA3 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFT1Q96AA3 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RFT1Q96AA3 AC068338.2-201ENST00000563278 1430 ntBASIC17.11■□□□□ 0.33
RFT1Q96AA3 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFT1Q96AA3 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.11■□□□□ 0.33
RFT1Q96AA3 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.11■□□□□ 0.33
RFT1Q96AA3 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
RFT1Q96AA3 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RFT1Q96AA3 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFT1Q96AA3 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.11■□□□□ 0.33
RFT1Q96AA3 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RFT1Q96AA3 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFT1Q96AA3 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFT1Q96AA3 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.1■□□□□ 0.33
RFT1Q96AA3 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFT1Q96AA3 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFT1Q96AA3 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFT1Q96AA3 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC17.1■□□□□ 0.33
RFT1Q96AA3 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC17.1■□□□□ 0.33
RFT1Q96AA3 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
RFT1Q96AA3 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.1■□□□□ 0.33
RFT1Q96AA3 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC17.1■□□□□ 0.33
RFT1Q96AA3 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC17.1■□□□□ 0.33
RFT1Q96AA3 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.1■□□□□ 0.33
RFT1Q96AA3 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC17.1■□□□□ 0.33
RFT1Q96AA3 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC17.1■□□□□ 0.33
RFT1Q96AA3 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC17.1■□□□□ 0.33
RFT1Q96AA3 GAS2L1P2-201ENST00000436355 1356 ntBASIC17.1■□□□□ 0.33
RFT1Q96AA3 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RFT1Q96AA3 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFT1Q96AA3 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFT1Q96AA3 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
RFT1Q96AA3 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFT1Q96AA3 PTBP1P-201ENST00000554374 1601 ntBASIC17.1■□□□□ 0.33
RFT1Q96AA3 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFT1Q96AA3 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFT1Q96AA3 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFT1Q96AA3 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFT1Q96AA3 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFT1Q96AA3 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.09■□□□□ 0.33
RFT1Q96AA3 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
RFT1Q96AA3 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.09■□□□□ 0.33
RFT1Q96AA3 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFT1Q96AA3 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFT1Q96AA3 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFT1Q96AA3 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFT1Q96AA3 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFT1Q96AA3 BCL2-203ENST00000589955 5011 ntBASIC17.09■□□□□ 0.33
RFT1Q96AA3 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
RFT1Q96AA3 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RFT1Q96AA3 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFT1Q96AA3 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC17.09■□□□□ 0.33
RFT1Q96AA3 AL355472.2-201ENST00000422958 438 ntBASIC17.09■□□□□ 0.33
RFT1Q96AA3 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
RFT1Q96AA3 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.09■□□□□ 0.33
RFT1Q96AA3 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.09■□□□□ 0.33
RFT1Q96AA3 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
RFT1Q96AA3 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFT1Q96AA3 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFT1Q96AA3 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFT1Q96AA3 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFT1Q96AA3 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.09■□□□□ 0.33
RFT1Q96AA3 AC009237.14-201ENST00000609975 1594 ntBASIC17.09■□□□□ 0.33
RFT1Q96AA3 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFT1Q96AA3 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFT1Q96AA3 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFT1Q96AA3 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.09■□□□□ 0.33
RFT1Q96AA3 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFT1Q96AA3 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RFT1Q96AA3 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
RFT1Q96AA3 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RFT1Q96AA3 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.08■□□□□ 0.33
RFT1Q96AA3 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
RFT1Q96AA3 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RFT1Q96AA3 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
RFT1Q96AA3 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RFT1Q96AA3 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RFT1Q96AA3 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.08■□□□□ 0.32
RFT1Q96AA3 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFT1Q96AA3 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFT1Q96AA3 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RFT1Q96AA3 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFT1Q96AA3 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms