Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CTR9Q6PD62 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC23■■□□□ 1.27
CTR9Q6PD62 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CTR9Q6PD62 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC23■■□□□ 1.27
CTR9Q6PD62 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC23■■□□□ 1.27
CTR9Q6PD62 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC23■■□□□ 1.27
CTR9Q6PD62 GLDC-219ENST00000640208 420 ntTSL 2 BASIC23■■□□□ 1.27
CTR9Q6PD62 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CTR9Q6PD62 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC23■■□□□ 1.27
CTR9Q6PD62 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
CTR9Q6PD62 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC22.99■■□□□ 1.27
CTR9Q6PD62 CYP2D8P-201ENST00000433633 1490 ntBASIC22.99■■□□□ 1.27
CTR9Q6PD62 KRT8P41-201ENST00000533985 1514 ntBASIC22.99■■□□□ 1.27
CTR9Q6PD62 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
CTR9Q6PD62 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CTR9Q6PD62 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC22.99■■□□□ 1.27
CTR9Q6PD62 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC22.99■■□□□ 1.27
CTR9Q6PD62 AP000692.2-201ENST00000608391 879 ntBASIC22.99■■□□□ 1.27
CTR9Q6PD62 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC22.99■■□□□ 1.27
CTR9Q6PD62 AC097493.4-201ENST00000641197 219 ntBASIC22.99■■□□□ 1.27
CTR9Q6PD62 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC22.99■■□□□ 1.27
CTR9Q6PD62 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC22.99■■□□□ 1.27
CTR9Q6PD62 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC22.99■■□□□ 1.27
CTR9Q6PD62 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
CTR9Q6PD62 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
CTR9Q6PD62 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC22.98■■□□□ 1.27
CTR9Q6PD62 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC22.98■■□□□ 1.27
CTR9Q6PD62 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 PRR31-201ENST00000371629 978 ntTSL 2 BASIC22.98■■□□□ 1.27
CTR9Q6PD62 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC22.98■■□□□ 1.27
CTR9Q6PD62 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC22.98■■□□□ 1.27
CTR9Q6PD62 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC22.98■■□□□ 1.27
CTR9Q6PD62 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC22.98■■□□□ 1.27
CTR9Q6PD62 LINC01023-201ENST00000606054 436 ntBASIC22.98■■□□□ 1.27
CTR9Q6PD62 DGCR10-201ENST00000609839 495 ntBASIC22.98■■□□□ 1.27
CTR9Q6PD62 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC22.98■■□□□ 1.27
CTR9Q6PD62 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CTR9Q6PD62 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC22.97■■□□□ 1.27
CTR9Q6PD62 TREX1-205ENST00000625293 1783 ntBASIC22.97■■□□□ 1.27
CTR9Q6PD62 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CTR9Q6PD62 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC22.97■■□□□ 1.27
CTR9Q6PD62 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC22.97■■□□□ 1.27
CTR9Q6PD62 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC22.97■■□□□ 1.27
CTR9Q6PD62 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CTR9Q6PD62 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CTR9Q6PD62 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
CTR9Q6PD62 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC22.97■■□□□ 1.27
CTR9Q6PD62 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC22.97■■□□□ 1.27
CTR9Q6PD62 FDX2-206ENST00000492239 773 ntTSL 2 BASIC22.97■■□□□ 1.27
CTR9Q6PD62 AC097488.1-201ENST00000507834 756 ntBASIC22.97■■□□□ 1.27
CTR9Q6PD62 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC22.97■■□□□ 1.27
CTR9Q6PD62 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC22.97■■□□□ 1.27
CTR9Q6PD62 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC22.97■■□□□ 1.27
CTR9Q6PD62 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC22.97■■□□□ 1.27
CTR9Q6PD62 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CTR9Q6PD62 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC22.97■■□□□ 1.27
CTR9Q6PD62 PWWP2AP1-201ENST00000429776 2273 ntBASIC22.97■■□□□ 1.27
CTR9Q6PD62 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC22.97■■□□□ 1.27
CTR9Q6PD62 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC22.97■■□□□ 1.27
CTR9Q6PD62 AC104417.2-201ENST00000562989 1793 ntBASIC22.96■■□□□ 1.27
CTR9Q6PD62 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC22.96■■□□□ 1.27
CTR9Q6PD62 GLRB-205ENST00000512619 728 ntTSL 3 BASIC22.96■■□□□ 1.27
CTR9Q6PD62 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC22.96■■□□□ 1.27
CTR9Q6PD62 AC010947.1-201ENST00000623454 693 ntBASIC22.96■■□□□ 1.27
CTR9Q6PD62 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CTR9Q6PD62 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CTR9Q6PD62 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC22.96■■□□□ 1.27
CTR9Q6PD62 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC22.96■■□□□ 1.27
CTR9Q6PD62 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC22.96■■□□□ 1.27
CTR9Q6PD62 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CTR9Q6PD62 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CTR9Q6PD62 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
CTR9Q6PD62 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC22.95■■□□□ 1.27
CTR9Q6PD62 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CTR9Q6PD62 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC22.95■■□□□ 1.26
CTR9Q6PD62 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CTR9Q6PD62 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CTR9Q6PD62 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
CTR9Q6PD62 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC22.95■■□□□ 1.26
CTR9Q6PD62 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC22.95■■□□□ 1.26
CTR9Q6PD62 DERL1-203ENST00000419562 918 ntTSL 2 BASIC22.95■■□□□ 1.26
CTR9Q6PD62 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
CTR9Q6PD62 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC22.95■■□□□ 1.26
CTR9Q6PD62 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms