Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 AC008687.6-201ENST00000596318 630 ntBASIC17.29■□□□□ 0.36
VSX1Q9NZR4 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
VSX1Q9NZR4 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.28■□□□□ 0.36
VSX1Q9NZR4 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 AC141586.3-201ENST00000562166 1838 ntBASIC17.27■□□□□ 0.36
VSX1Q9NZR4 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 KRT18P16-201ENST00000510337 1294 ntBASIC17.27■□□□□ 0.36
VSX1Q9NZR4 AC090192.1-201ENST00000517740 490 ntBASIC17.27■□□□□ 0.36
VSX1Q9NZR4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX1Q9NZR4 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VSX1Q9NZR4 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
VSX1Q9NZR4 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VSX1Q9NZR4 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VSX1Q9NZR4 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VSX1Q9NZR4 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VSX1Q9NZR4 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.35
VSX1Q9NZR4 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.27■□□□□ 0.35
VSX1Q9NZR4 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VSX1Q9NZR4 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
VSX1Q9NZR4 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
VSX1Q9NZR4 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
VSX1Q9NZR4 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
VSX1Q9NZR4 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VSX1Q9NZR4 TEX21P-204ENST00000641479 1693 ntBASIC17.26■□□□□ 0.35
VSX1Q9NZR4 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VSX1Q9NZR4 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
VSX1Q9NZR4 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.26■□□□□ 0.35
VSX1Q9NZR4 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VSX1Q9NZR4 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VSX1Q9NZR4 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
VSX1Q9NZR4 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VSX1Q9NZR4 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VSX1Q9NZR4 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VSX1Q9NZR4 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
VSX1Q9NZR4 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms