Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CLN6Q9NWW5 MIR638-201ENST00000385237 100 ntBASIC17.69■□□□□ 0.42
CLN6Q9NWW5 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC17.69■□□□□ 0.42
CLN6Q9NWW5 TERF1P5-201ENST00000477545 1207 ntBASIC17.69■□□□□ 0.42
CLN6Q9NWW5 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.69■□□□□ 0.42
CLN6Q9NWW5 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC17.69■□□□□ 0.42
CLN6Q9NWW5 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC17.69■□□□□ 0.42
CLN6Q9NWW5 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLN6Q9NWW5 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC17.69■□□□□ 0.42
CLN6Q9NWW5 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLN6Q9NWW5 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.69■□□□□ 0.42
CLN6Q9NWW5 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLN6Q9NWW5 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CLN6Q9NWW5 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLN6Q9NWW5 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 AL390961.4-201ENST00000623958 2535 ntBASIC17.68■□□□□ 0.42
CLN6Q9NWW5 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 AL162412.1-201ENST00000567129 965 ntBASIC17.68■□□□□ 0.42
CLN6Q9NWW5 KRT18P61-201ENST00000585825 1298 ntBASIC17.68■□□□□ 0.42
CLN6Q9NWW5 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLN6Q9NWW5 AC141586.3-201ENST00000562166 1838 ntBASIC17.68■□□□□ 0.42
CLN6Q9NWW5 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 AC010536.3-201ENST00000620306 533 ntBASIC17.67■□□□□ 0.42
CLN6Q9NWW5 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.67■□□□□ 0.42
CLN6Q9NWW5 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 AC135050.7-201ENST00000624508 2218 ntBASIC17.66■□□□□ 0.42
CLN6Q9NWW5 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 AC090164.3-201ENST00000610780 2143 ntBASIC17.66■□□□□ 0.42
CLN6Q9NWW5 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.66■□□□□ 0.42
CLN6Q9NWW5 GAS2L1P2-201ENST00000436355 1356 ntBASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms