Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC16.89■□□□□ 0.29
NKX3-1Q99801 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
NKX3-1Q99801 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.89■□□□□ 0.29
NKX3-1Q99801 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 ID1-201ENST00000376105 1233 ntBASIC16.89■□□□□ 0.29
NKX3-1Q99801 HLA-G-202ENST00000376815 851 ntBASIC16.89■□□□□ 0.29
NKX3-1Q99801 HLA-G-203ENST00000376818 1127 ntBASIC16.89■□□□□ 0.29
NKX3-1Q99801 METTL26-203ENST00000397664 604 ntTSL 2 BASIC16.89■□□□□ 0.29
NKX3-1Q99801 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC16.89■□□□□ 0.29
NKX3-1Q99801 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
NKX3-1Q99801 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 AL161938.1-201ENST00000569833 2180 ntBASIC16.89■□□□□ 0.29
NKX3-1Q99801 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC16.89■□□□□ 0.29
NKX3-1Q99801 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
NKX3-1Q99801 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX3-1Q99801 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
NKX3-1Q99801 AC010980.2-201ENST00000587099 1412 ntBASIC16.88■□□□□ 0.29
NKX3-1Q99801 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
NKX3-1Q99801 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.88■□□□□ 0.29
NKX3-1Q99801 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
NKX3-1Q99801 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
NKX3-1Q99801 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
NKX3-1Q99801 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC16.88■□□□□ 0.29
NKX3-1Q99801 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
NKX3-1Q99801 C2orf69P4-201ENST00000565394 541 ntBASIC16.88■□□□□ 0.29
NKX3-1Q99801 MDK-213ENST00000617138 635 ntTSL 2 BASIC16.88■□□□□ 0.29
NKX3-1Q99801 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC16.88■□□□□ 0.29
NKX3-1Q99801 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
NKX3-1Q99801 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
NKX3-1Q99801 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
NKX3-1Q99801 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
NKX3-1Q99801 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
NKX3-1Q99801 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
NKX3-1Q99801 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.88■□□□□ 0.29
NKX3-1Q99801 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
NKX3-1Q99801 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
NKX3-1Q99801 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC16.88■□□□□ 0.29
NKX3-1Q99801 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX3-1Q99801 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC16.87■□□□□ 0.29
NKX3-1Q99801 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX3-1Q99801 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX3-1Q99801 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX3-1Q99801 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX3-1Q99801 MIR663A-201ENST00000385250 93 ntBASIC16.87■□□□□ 0.29
NKX3-1Q99801 HLA-L-209ENST00000420110 1011 ntBASIC16.87■□□□□ 0.29
NKX3-1Q99801 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC16.87■□□□□ 0.29
NKX3-1Q99801 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
NKX3-1Q99801 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
NKX3-1Q99801 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC16.87■□□□□ 0.29
NKX3-1Q99801 AC069236.1-201ENST00000604339 616 ntBASIC16.87■□□□□ 0.29
NKX3-1Q99801 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX3-1Q99801 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX3-1Q99801 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX3-1Q99801 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX3-1Q99801 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
NKX3-1Q99801 AC018470.1-201ENST00000624790 3129 ntBASIC16.87■□□□□ 0.29
NKX3-1Q99801 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX3-1Q99801 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC16.87■□□□□ 0.29
NKX3-1Q99801 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
NKX3-1Q99801 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC16.86■□□□□ 0.29
NKX3-1Q99801 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX3-1Q99801 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX3-1Q99801 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC16.86■□□□□ 0.29
NKX3-1Q99801 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
NKX3-1Q99801 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX3-1Q99801 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX3-1Q99801 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
NKX3-1Q99801 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX3-1Q99801 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
NKX3-1Q99801 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
NKX3-1Q99801 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC16.86■□□□□ 0.29
NKX3-1Q99801 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC16.86■□□□□ 0.29
NKX3-1Q99801 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC16.86■□□□□ 0.29
NKX3-1Q99801 AC008694.1-202ENST00000636953 945 ntBASIC16.86■□□□□ 0.29
NKX3-1Q99801 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.86■□□□□ 0.29
NKX3-1Q99801 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.86■□□□□ 0.29
NKX3-1Q99801 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
NKX3-1Q99801 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
NKX3-1Q99801 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX3-1Q99801 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
NKX3-1Q99801 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
NKX3-1Q99801 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX3-1Q99801 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX3-1Q99801 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX3-1Q99801 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.86■□□□□ 0.29
NKX3-1Q99801 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
NKX3-1Q99801 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms