Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.46■□□□□ 0.39
SNRNP40Q96DI7 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.46■□□□□ 0.39
SNRNP40Q96DI7 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
SNRNP40Q96DI7 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SNRNP40Q96DI7 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SNRNP40Q96DI7 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SNRNP40Q96DI7 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SNRNP40Q96DI7 KRT8P45-201ENST00000414328 1447 ntBASIC17.46■□□□□ 0.39
SNRNP40Q96DI7 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.46■□□□□ 0.39
SNRNP40Q96DI7 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SNRNP40Q96DI7 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
SNRNP40Q96DI7 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
SNRNP40Q96DI7 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 AL136038.3-201ENST00000561909 1096 ntBASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC17.45■□□□□ 0.38
SNRNP40Q96DI7 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 AC026310.3-201ENST00000625186 2373 ntBASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SNRNP40Q96DI7 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.43■□□□□ 0.38
SNRNP40Q96DI7 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNRNP40Q96DI7 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.43■□□□□ 0.38
SNRNP40Q96DI7 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SNRNP40Q96DI7 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC17.43■□□□□ 0.38
SNRNP40Q96DI7 AC112907.2-201ENST00000448639 330 ntBASIC17.43■□□□□ 0.38
SNRNP40Q96DI7 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.43■□□□□ 0.38
SNRNP40Q96DI7 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNRNP40Q96DI7 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNRNP40Q96DI7 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.43■□□□□ 0.38
SNRNP40Q96DI7 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNRNP40Q96DI7 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SNRNP40Q96DI7 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNRNP40Q96DI7 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNRNP40Q96DI7 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 AP000523.1-201ENST00000398242 1049 ntBASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.42■□□□□ 0.38
SNRNP40Q96DI7 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms