Protein–RNA interactions for Protein: Q6NWY9

PRPF40B, Pre-mRNA-processing factor 40 homolog B, humanhuman

Known RBP Predictions only

Length 871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40BQ6NWY9 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
PRPF40BQ6NWY9 CD70-202ENST00000423145 881 ntTSL 2 BASIC24.33■■□□□ 1.49
PRPF40BQ6NWY9 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC24.33■■□□□ 1.49
PRPF40BQ6NWY9 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC24.33■■□□□ 1.49
PRPF40BQ6NWY9 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC24.33■■□□□ 1.49
PRPF40BQ6NWY9 DBP-204ENST00000599385 709 ntTSL 3 BASIC24.33■■□□□ 1.49
PRPF40BQ6NWY9 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC24.33■■□□□ 1.49
PRPF40BQ6NWY9 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
PRPF40BQ6NWY9 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PRPF40BQ6NWY9 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC24.33■■□□□ 1.49
PRPF40BQ6NWY9 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC24.33■■□□□ 1.48
PRPF40BQ6NWY9 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC24.33■■□□□ 1.48
PRPF40BQ6NWY9 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 AC018553.1-201ENST00000616682 1458 ntBASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 CCR12P-201ENST00000446203 998 ntBASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 AC092647.4-201ENST00000457211 535 ntBASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 SLC25A24-204ENST00000569674 2357 ntBASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC24.32■■□□□ 1.48
PRPF40BQ6NWY9 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 GOLGA6L3-201ENST00000507199 1679 ntBASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 AC004951.3-201ENST00000418645 1148 ntBASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 TPM4P1-201ENST00000436100 807 ntBASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 FAM207BP-201ENST00000447172 505 ntBASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 COX11P1-201ENST00000489116 835 ntBASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PRPF40BQ6NWY9 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 PCDHAC2-203ENST00000615316 3011 ntBASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 SLC25A1P2-201ENST00000430693 912 ntBASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 AC007663.1-201ENST00000438948 1240 ntBASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 HLA-A-209ENST00000638375 975 ntBASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC24.3■■□□□ 1.48
PRPF40BQ6NWY9 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 SMG8-203ENST00000578922 2178 ntBASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 AC112907.3-201ENST00000577781 2400 ntBASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 KRT18P48-201ENST00000434763 852 ntBASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC24.29■■□□□ 1.48
PRPF40BQ6NWY9 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms