Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 SLC17A9-202ENST00000370351 3580 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.472e-20■■□□□ 11.4
LSM11P83369 SLC17A9-207ENST00000488738 3992 ntTSL 212□□□□□ -0.492e-20■■□□□ 11.4
LSM11P83369 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.059e-7■■□□□ 11.4
LSM11P83369 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.33■□□□□ 0.693e-15■□□□□ 11.3
LSM11P83369 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.98■□□□□ 0.313e-15■□□□□ 11.3
LSM11P83369 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.153e-15■□□□□ 11.3
LSM11P83369 VEGFA-215ENST00000497139 2746 ntTSL 1 (best)12.05□□□□□ -0.483e-23■□□□□ 11.3
LSM11P83369 SGSM2-206ENST00000572925 644 ntTSL 312.09□□□□□ -0.472e-10■□□□□ 11.3
LSM11P83369 SGSM2-211ENST00000574563 3410 ntTSL 2 BASIC10.8□□□□□ -0.682e-10■□□□□ 11.3
LSM11P83369 SON-210ENST00000465834 957 ntTSL 310.54□□□□□ -0.725e-8■□□□□ 11.3
LSM11P83369 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.2□□□□□ -0.142e-6■□□□□ 11.3
LSM11P83369 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.2□□□□□ -0.142e-6■□□□□ 11.3
LSM11P83369 SLC38A5-211ENST00000615300 797 ntTSL 313.31□□□□□ -0.282e-6■□□□□ 11.3
LSM11P83369 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.342e-6■□□□□ 11.3
LSM11P83369 SLC38A5-209ENST00000497336 493 ntTSL 512.84□□□□□ -0.352e-6■□□□□ 11.3
LSM11P83369 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.42e-6■□□□□ 11.3
LSM11P83369 LINC01311-201ENST00000565162 1445 ntBASIC16.02■□□□□ 0.166e-8■□□□□ 11.3
LSM11P83369 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.265e-8■□□□□ 11.3
LSM11P83369 ZNF692-203ENST00000412341 1916 ntTSL 521.04■□□□□ 0.965e-8■□□□□ 11.3
LSM11P83369 ZNF692-208ENST00000470787 1544 ntTSL 220.53■□□□□ 0.885e-8■□□□□ 11.3
LSM11P83369 ZNF692-211ENST00000477070 1521 ntTSL 518.74■□□□□ 0.591e-11■□□□□ 11.3
LSM11P83369 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.555e-8■□□□□ 11.3
LSM11P83369 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.375e-8■□□□□ 11.3
LSM11P83369 ZNF692-227ENST00000533927 2026 ntTSL 1 (best)16.71■□□□□ 0.275e-8■□□□□ 11.3
LSM11P83369 ZNF692-210ENST00000476503 1006 ntAPPRIS ALT2 TSL 315.52■□□□□ 0.081e-11■□□□□ 11.3
LSM11P83369 ZNF692-206ENST00000463519 2704 ntTSL 1 (best)13.73□□□□□ -0.215e-8■□□□□ 11.3
LSM11P83369 ZNF692-213ENST00000482023 851 ntTSL 510.13□□□□□ -0.791e-11■□□□□ 11.3
LSM11P83369 FAR2P1-204ENST00000444030 764 ntTSL 1 (best)13.34□□□□□ -0.272e-6■□□□□ 11.3
LSM11P83369 FAR2P1-205ENST00000449170 3793 ntTSL 27.67□□□□□ -1.182e-6■□□□□ 11.3
LSM11P83369 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC5.44□□□□□ -1.542e-6■□□□□ 11.3
LSM11P83369 ILF3-223ENST00000593061 475 ntTSL 316.61■□□□□ 0.252e-7■□□□□ 11.3
LSM11P83369 NUP107-203ENST00000401003 729 ntTSL 510.83□□□□□ -0.685e-6■□□□□ 11.3
LSM11P83369 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.58e-9■□□□□ 11.3
LSM11P83369 SMYD2-203ENST00000460580 1618 ntTSL 1 (best)17.57■□□□□ 0.48e-9■□□□□ 11.3
LSM11P83369 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.47■□□□□ 0.238e-9■□□□□ 11.3
LSM11P83369 AC104809.2-202ENST00000457369 800 ntTSL 315.13■□□□□ 0.018e-9■□□□□ 11.3
LSM11P83369 HNRNPA1-205ENST00000547566 1234 ntTSL 1 (best)14.05□□□□□ -0.168e-9■□□□□ 11.3
LSM11P83369 SMYD2-204ENST00000471645 4732 ntTSL 1 (best)13.38□□□□□ -0.278e-9■□□□□ 11.3
LSM11P83369 NELFCD-209ENST00000486263 708 ntTSL 212.48□□□□□ -0.411e-11■□□□□ 11.3
LSM11P83369 SMYD2-206ENST00000491455 3809 ntTSL 212.37□□□□□ -0.438e-9■□□□□ 11.3
LSM11P83369 SMYD2-202ENST00000416415 702 ntTSL 511.75□□□□□ -0.538e-9■□□□□ 11.3
LSM11P83369 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC11.55□□□□□ -0.568e-9■□□□□ 11.3
LSM11P83369 HNRNPA1-211ENST00000551665 925 ntTSL 210.36□□□□□ -0.758e-9■□□□□ 11.3
LSM11P83369 HNRNPA1-203ENST00000546500 4121 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.868e-9■□□□□ 11.3
LSM11P83369 HNRNPA1-214ENST00000551803 372 ntTSL 38.66□□□□□ -1.028e-9■□□□□ 11.3
LSM11P83369 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.461e-18■□□□□ 11.3
LSM11P83369 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC15.32■□□□□ 0.041e-18■□□□□ 11.3
LSM11P83369 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.121e-6■□□□□ 11.3
LSM11P83369 GSK3A-203ENST00000453535 1897 ntTSL 526.22■■□□□ 1.798e-8■□□□□ 11.3
LSM11P83369 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.158e-8■□□□□ 11.3
LSM11P83369 LTBP3-213ENST00000529371 575 ntTSL 222.12■■□□□ 1.138e-8■□□□□ 11.3
LSM11P83369 STXBP2-213ENST00000599278 295 ntTSL 312.83□□□□□ -0.368e-8■□□□□ 11.3
LSM11P83369 EHMT2-205ENST00000436026 894 ntTSL 511.71□□□□□ -0.533e-6■□□□□ 11.3
LSM11P83369 GSK3A-202ENST00000398249 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.028e-8■□□□□ 11.3
LSM11P83369 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.75□□□□□ -0.212e-8■□□□□ 11.3
LSM11P83369 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC12.96□□□□□ -0.332e-8■□□□□ 11.3
LSM11P83369 RPARP-AS1-208ENST00000598368 2453 nt9.73□□□□□ -0.852e-8■□□□□ 11.3
LSM11P83369 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC6.1□□□□□ -1.432e-8■□□□□ 11.3
LSM11P83369 MAVS-201ENST00000416600 11596 ntTSL 1 (best) BASIC7.33□□□□□ -1.241e-6■□□□□ 11.3
LSM11P83369 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.281e-6■□□□□ 11.3
LSM11P83369 TPM2-205ENST00000471212 1363 ntTSL 214.9□□□□□ -0.021e-6■□□□□ 11.3
LSM11P83369 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.14□□□□□ -0.311e-6■□□□□ 11.3
LSM11P83369 TPM2-208ENST00000607559 518 ntTSL 211.6□□□□□ -0.551e-6■□□□□ 11.3
LSM11P83369 AC012065.3-201ENST00000602736 439 ntBASIC8.77□□□□□ -1.015e-8■□□□□ 11.3
LSM11P83369 CTTN-204ENST00000393747 1315 ntTSL 515.55■□□□□ 0.084e-8■□□□□ 11.3
LSM11P83369 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.6■□□□□ 0.571e-11■□□□□ 11.3
LSM11P83369 UBE2Q2P2-203ENST00000613592 761 ntBASIC10.48□□□□□ -0.731e-11■□□□□ 11.3
LSM11P83369 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.741e-11■□□□□ 11.3
LSM11P83369 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.941e-11■□□□□ 11.3
LSM11P83369 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.44□□□□□ -2.021e-11■□□□□ 11.3
LSM11P83369 VEGFA-214ENST00000493786 551 ntTSL 26.77□□□□□ -1.332e-28■□□□□ 11.2
LSM11P83369 RHOT2-227ENST00000602564 3695 ntTSL 514.29□□□□□ -0.129e-7■□□□□ 11.2
LSM11P83369 STAT6-222ENST00000557563 871 ntTSL 215.84■□□□□ 0.131e-10■□□□□ 11.2
LSM11P83369 STAT6-202ENST00000454075 3037 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.391e-10■□□□□ 11.2
LSM11P83369 STAT6-203ENST00000537215 2886 ntTSL 2 BASIC11.81□□□□□ -0.521e-10■□□□□ 11.2
LSM11P83369 STAT6-212ENST00000554764 2777 ntTSL 211.56□□□□□ -0.561e-10■□□□□ 11.2
LSM11P83369 STAT6-220ENST00000556155 2924 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.61e-10■□□□□ 11.2
LSM11P83369 STAT6-205ENST00000543873 3119 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.61e-10■□□□□ 11.2
LSM11P83369 STAT6-204ENST00000538913 2879 ntTSL 2 BASIC11.06□□□□□ -0.641e-10■□□□□ 11.2
LSM11P83369 XRCC5-209ENST00000485763 616 ntTSL 210.5□□□□□ -0.731e-10■□□□□ 11.2
LSM11P83369 XRCC5-202ENST00000392133 3761 ntAPPRIS P1 TSL 5 BASIC8.49□□□□□ -1.051e-10■□□□□ 11.2
LSM11P83369 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.381e-10■□□□□ 11.2
LSM11P83369 XRCC5-206ENST00000460284 2962 ntTSL 1 (best)5.36□□□□□ -1.551e-10■□□□□ 11.2
LSM11P83369 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 14e-6■□□□□ 11.2
LSM11P83369 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.72■□□□□ 0.914e-6■□□□□ 11.2
LSM11P83369 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.95■□□□□ 0.624e-6■□□□□ 11.2
LSM11P83369 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.614e-6■□□□□ 11.2
LSM11P83369 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.41■□□□□ 0.544e-6■□□□□ 11.2
LSM11P83369 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.476e-6■□□□□ 11.2
LSM11P83369 ARAP1-212ENST00000536885 639 ntTSL 217.49■□□□□ 0.394e-6■□□□□ 11.2
LSM11P83369 BDH1-205ENST00000432819 955 ntTSL 517.3■□□□□ 0.364e-6■□□□□ 11.2
LSM11P83369 BDH1-209ENST00000446746 868 ntTSL 317.3■□□□□ 0.364e-6■□□□□ 11.2
LSM11P83369 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.294e-6■□□□□ 11.2
LSM11P83369 ENGASE-206ENST00000579809 1428 ntTSL 1 (best)16.79■□□□□ 0.284e-6■□□□□ 11.2
LSM11P83369 IFT172-206ENST00000450564 760 ntTSL 316.75■□□□□ 0.271e-7■□□□□ 11.2
LSM11P83369 PRMT1-216ENST00000530361 866 ntTSL 315.94■□□□□ 0.144e-6■□□□□ 11.2
LSM11P83369 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.68■□□□□ 0.14e-6■□□□□ 11.2
LSM11P83369 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.88□□□□□ -0.034e-6■□□□□ 11.2
LSM11P83369 SHC1-209ENST00000444664 1305 ntTSL 514.74□□□□□ -0.054e-6■□□□□ 11.2
LSM11P83369 BDH1-206ENST00000434143 659 ntTSL 314.46□□□□□ -0.094e-6■□□□□ 11.2
Retrieved 100 of 11,495 protein–RNA pairs in 68.7 ms