Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
TPM4P67936 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TPM4P67936 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TPM4P67936 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TPM4P67936 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.7■■□□□ 1.06
TPM4P67936 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TPM4P67936 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
TPM4P67936 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TPM4P67936 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC21.7■■□□□ 1.06
TPM4P67936 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TPM4P67936 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
TPM4P67936 KRT18P61-201ENST00000585825 1298 ntBASIC21.7■■□□□ 1.06
TPM4P67936 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
TPM4P67936 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TPM4P67936 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TPM4P67936 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
TPM4P67936 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.7■■□□□ 1.06
TPM4P67936 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TPM4P67936 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
TPM4P67936 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.7■■□□□ 1.06
TPM4P67936 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
TPM4P67936 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TPM4P67936 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
TPM4P67936 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
TPM4P67936 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.69■■□□□ 1.06
TPM4P67936 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TPM4P67936 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.69■■□□□ 1.06
TPM4P67936 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.69■■□□□ 1.06
TPM4P67936 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.69■■□□□ 1.06
TPM4P67936 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TPM4P67936 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.69■■□□□ 1.06
TPM4P67936 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
TPM4P67936 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
TPM4P67936 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
TPM4P67936 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.69■■□□□ 1.06
TPM4P67936 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.69■■□□□ 1.06
TPM4P67936 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
TPM4P67936 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
TPM4P67936 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
TPM4P67936 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TPM4P67936 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
TPM4P67936 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
TPM4P67936 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
TPM4P67936 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.68■■□□□ 1.06
TPM4P67936 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
TPM4P67936 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TPM4P67936 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TPM4P67936 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TPM4P67936 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TPM4P67936 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TPM4P67936 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TPM4P67936 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.68■■□□□ 1.06
TPM4P67936 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TPM4P67936 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TPM4P67936 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.68■■□□□ 1.06
TPM4P67936 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.68■■□□□ 1.06
TPM4P67936 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.68■■□□□ 1.06
TPM4P67936 AC141586.3-201ENST00000562166 1838 ntBASIC21.68■■□□□ 1.06
TPM4P67936 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TPM4P67936 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.68■■□□□ 1.06
TPM4P67936 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.68■■□□□ 1.06
TPM4P67936 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TPM4P67936 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC21.68■■□□□ 1.06
TPM4P67936 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
TPM4P67936 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TPM4P67936 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TPM4P67936 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TPM4P67936 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TPM4P67936 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.67■■□□□ 1.06
TPM4P67936 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TPM4P67936 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.67■■□□□ 1.06
TPM4P67936 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.67■■□□□ 1.06
TPM4P67936 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.67■■□□□ 1.06
TPM4P67936 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.67■■□□□ 1.06
TPM4P67936 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.67■■□□□ 1.06
TPM4P67936 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TPM4P67936 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TPM4P67936 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
TPM4P67936 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.67■■□□□ 1.06
TPM4P67936 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
TPM4P67936 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.66■■□□□ 1.06
TPM4P67936 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.66■■□□□ 1.06
TPM4P67936 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.66■■□□□ 1.06
TPM4P67936 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.66■■□□□ 1.06
TPM4P67936 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 AC079598.2-202ENST00000546624 1451 ntBASIC21.66■■□□□ 1.06
TPM4P67936 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
TPM4P67936 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.66■■□□□ 1.06
TPM4P67936 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.66■■□□□ 1.06
TPM4P67936 CYP2T3P-201ENST00000601990 817 ntBASIC21.66■■□□□ 1.06
TPM4P67936 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms