Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.29■□□□□ 0.84
LIG3P49916 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.29■□□□□ 0.84
LIG3P49916 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.29■□□□□ 0.84
LIG3P49916 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIG3P49916 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
LIG3P49916 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.29■□□□□ 0.84
LIG3P49916 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.29■□□□□ 0.84
LIG3P49916 AC092368.3-202ENST00000574180 1591 ntBASIC20.29■□□□□ 0.84
LIG3P49916 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIG3P49916 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIG3P49916 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
LIG3P49916 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.28■□□□□ 0.84
LIG3P49916 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIG3P49916 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIG3P49916 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
LIG3P49916 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
LIG3P49916 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
LIG3P49916 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIG3P49916 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIG3P49916 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LIG3P49916 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LIG3P49916 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIG3P49916 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIG3P49916 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LIG3P49916 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.28■□□□□ 0.84
LIG3P49916 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIG3P49916 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIG3P49916 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIG3P49916 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIG3P49916 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.28■□□□□ 0.84
LIG3P49916 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LIG3P49916 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LIG3P49916 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LIG3P49916 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIG3P49916 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LIG3P49916 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIG3P49916 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIG3P49916 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIG3P49916 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.27■□□□□ 0.84
LIG3P49916 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIG3P49916 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIG3P49916 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
LIG3P49916 AL032819.2-201ENST00000624543 2162 ntBASIC20.27■□□□□ 0.84
LIG3P49916 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIG3P49916 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.27■□□□□ 0.84
LIG3P49916 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
LIG3P49916 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
LIG3P49916 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIG3P49916 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
LIG3P49916 ESRRAP1-201ENST00000400596 1257 ntBASIC20.27■□□□□ 0.84
LIG3P49916 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIG3P49916 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.27■□□□□ 0.84
LIG3P49916 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.27■□□□□ 0.84
LIG3P49916 PNMA6B-201ENST00000538162 1200 ntBASIC20.27■□□□□ 0.84
LIG3P49916 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIG3P49916 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.27■□□□□ 0.84
LIG3P49916 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
LIG3P49916 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
LIG3P49916 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIG3P49916 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIG3P49916 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LIG3P49916 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
LIG3P49916 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.83
LIG3P49916 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
LIG3P49916 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LIG3P49916 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.27■□□□□ 0.83
LIG3P49916 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.27■□□□□ 0.83
LIG3P49916 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
LIG3P49916 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIG3P49916 AC106820.2-201ENST00000563775 3264 ntBASIC20.26■□□□□ 0.83
LIG3P49916 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.26■□□□□ 0.83
LIG3P49916 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.26■□□□□ 0.83
LIG3P49916 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.26■□□□□ 0.83
LIG3P49916 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.26■□□□□ 0.83
LIG3P49916 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIG3P49916 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
LIG3P49916 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.26■□□□□ 0.83
LIG3P49916 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.26■□□□□ 0.83
LIG3P49916 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.26■□□□□ 0.83
LIG3P49916 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIG3P49916 TMEM191A-211ENST00000637163 1067 ntBASIC20.26■□□□□ 0.83
LIG3P49916 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIG3P49916 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIG3P49916 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
LIG3P49916 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
LIG3P49916 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIG3P49916 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.26■□□□□ 0.83
LIG3P49916 FP700111.2-201ENST00000619190 1892 ntBASIC20.26■□□□□ 0.83
LIG3P49916 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.26■□□□□ 0.83
LIG3P49916 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LIG3P49916 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIG3P49916 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIG3P49916 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LIG3P49916 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIG3P49916 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIG3P49916 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIG3P49916 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIG3P49916 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
LIG3P49916 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LIG3P49916 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms