Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 AC139713.2-201ENST00000641328 2723 ntBASIC14.57□□□□□ -0.08
HLA-DQA1P01909 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 NALT1-201ENST00000429224 738 ntTSL 5 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 PBX2P1-201ENST00000493219 1291 ntBASIC14.57□□□□□ -0.08
HLA-DQA1P01909 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 SLC47A1P1-202ENST00000449666 945 ntBASIC14.56□□□□□ -0.08
HLA-DQA1P01909 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
HLA-DQA1P01909 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 AC245052.3-201ENST00000450182 901 ntBASIC14.55□□□□□ -0.08
HLA-DQA1P01909 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DQA1P01909 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DQA1P01909 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms