Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.26■□□□□ 0.51
LDB3O75112 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.26■□□□□ 0.51
LDB3O75112 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.26■□□□□ 0.51
LDB3O75112 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB3O75112 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB3O75112 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.26■□□□□ 0.51
LDB3O75112 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.26■□□□□ 0.51
LDB3O75112 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LDB3O75112 LINC01465-201ENST00000408887 1940 ntBASIC18.26■□□□□ 0.51
LDB3O75112 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB3O75112 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB3O75112 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LDB3O75112 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDB3O75112 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDB3O75112 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.26■□□□□ 0.51
LDB3O75112 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB3O75112 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB3O75112 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDB3O75112 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB3O75112 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.25■□□□□ 0.51
LDB3O75112 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
LDB3O75112 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
LDB3O75112 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.25■□□□□ 0.51
LDB3O75112 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
LDB3O75112 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
LDB3O75112 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.25■□□□□ 0.51
LDB3O75112 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.25■□□□□ 0.51
LDB3O75112 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.25■□□□□ 0.51
LDB3O75112 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.25■□□□□ 0.51
LDB3O75112 RARRES2P10-201ENST00000564312 460 ntBASIC18.25■□□□□ 0.51
LDB3O75112 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.25■□□□□ 0.51
LDB3O75112 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.25■□□□□ 0.51
LDB3O75112 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDB3O75112 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDB3O75112 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.24■□□□□ 0.51
LDB3O75112 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
LDB3O75112 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.24■□□□□ 0.51
LDB3O75112 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LDB3O75112 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
LDB3O75112 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDB3O75112 AP002982.1-201ENST00000492365 877 ntBASIC18.24■□□□□ 0.51
LDB3O75112 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.24■□□□□ 0.51
LDB3O75112 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.24■□□□□ 0.51
LDB3O75112 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LDB3O75112 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.24■□□□□ 0.51
LDB3O75112 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDB3O75112 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.24■□□□□ 0.51
LDB3O75112 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDB3O75112 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDB3O75112 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDB3O75112 AC093484.2-201ENST00000580996 2166 ntBASIC18.24■□□□□ 0.51
LDB3O75112 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.23■□□□□ 0.51
LDB3O75112 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.23■□□□□ 0.51
LDB3O75112 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB3O75112 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LDB3O75112 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB3O75112 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB3O75112 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.23■□□□□ 0.51
LDB3O75112 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB3O75112 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LDB3O75112 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.23■□□□□ 0.51
LDB3O75112 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LDB3O75112 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.23■□□□□ 0.51
LDB3O75112 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.23■□□□□ 0.51
LDB3O75112 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.23■□□□□ 0.51
LDB3O75112 AF186192.3-201ENST00000583427 947 ntBASIC18.23■□□□□ 0.51
LDB3O75112 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.23■□□□□ 0.51
LDB3O75112 HLA-A-209ENST00000638375 975 ntBASIC18.23■□□□□ 0.51
LDB3O75112 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
LDB3O75112 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.23■□□□□ 0.51
LDB3O75112 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.23■□□□□ 0.51
LDB3O75112 ZNF815P-204ENST00000434898 1737 ntBASIC18.23■□□□□ 0.51
LDB3O75112 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.23■□□□□ 0.51
LDB3O75112 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB3O75112 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB3O75112 AC116562.4-201ENST00000641316 2276 ntBASIC18.23■□□□□ 0.51
LDB3O75112 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.23■□□□□ 0.51
LDB3O75112 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.23■□□□□ 0.51
LDB3O75112 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB3O75112 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB3O75112 Z82202.1-201ENST00000623446 1880 ntBASIC18.22■□□□□ 0.51
LDB3O75112 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB3O75112 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.22■□□□□ 0.51
LDB3O75112 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms