Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.81■□□□□ 0.6
UBFD1O14562 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBFD1O14562 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
UBFD1O14562 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.81■□□□□ 0.6
UBFD1O14562 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.81■□□□□ 0.6
UBFD1O14562 TSPY6P-201ENST00000448518 926 ntBASIC18.81■□□□□ 0.6
UBFD1O14562 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.81■□□□□ 0.6
UBFD1O14562 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.81■□□□□ 0.6
UBFD1O14562 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
UBFD1O14562 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBFD1O14562 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.81■□□□□ 0.6
UBFD1O14562 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBFD1O14562 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.81■□□□□ 0.6
UBFD1O14562 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.81■□□□□ 0.6
UBFD1O14562 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBFD1O14562 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBFD1O14562 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.81■□□□□ 0.6
UBFD1O14562 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBFD1O14562 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.81■□□□□ 0.6
UBFD1O14562 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBFD1O14562 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.81■□□□□ 0.6
UBFD1O14562 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
UBFD1O14562 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
UBFD1O14562 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.8■□□□□ 0.6
UBFD1O14562 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.8■□□□□ 0.6
UBFD1O14562 NCF1B-203ENST00000435988 1254 ntBASIC18.8■□□□□ 0.6
UBFD1O14562 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.8■□□□□ 0.6
UBFD1O14562 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.8■□□□□ 0.6
UBFD1O14562 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
UBFD1O14562 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
UBFD1O14562 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.8■□□□□ 0.6
UBFD1O14562 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.8■□□□□ 0.6
UBFD1O14562 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBFD1O14562 AC092368.3-202ENST00000574180 1591 ntBASIC18.8■□□□□ 0.6
UBFD1O14562 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
UBFD1O14562 AP006587.1-201ENST00000534129 1502 ntBASIC18.79■□□□□ 0.6
UBFD1O14562 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.79■□□□□ 0.6
UBFD1O14562 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UBFD1O14562 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBFD1O14562 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBFD1O14562 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBFD1O14562 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBFD1O14562 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBFD1O14562 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBFD1O14562 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBFD1O14562 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UBFD1O14562 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UBFD1O14562 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBFD1O14562 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.79■□□□□ 0.6
UBFD1O14562 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.79■□□□□ 0.6
UBFD1O14562 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBFD1O14562 KRT8P8-201ENST00000434750 1448 ntBASIC18.79■□□□□ 0.6
UBFD1O14562 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBFD1O14562 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBFD1O14562 AC104581.1-202ENST00000635932 2618 ntBASIC18.79■□□□□ 0.6
UBFD1O14562 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.79■□□□□ 0.6
UBFD1O14562 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.79■□□□□ 0.6
UBFD1O14562 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.78■□□□□ 0.6
UBFD1O14562 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.78■□□□□ 0.6
UBFD1O14562 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.78■□□□□ 0.6
UBFD1O14562 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.78■□□□□ 0.6
UBFD1O14562 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.78■□□□□ 0.6
UBFD1O14562 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
UBFD1O14562 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.78■□□□□ 0.6
UBFD1O14562 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.78■□□□□ 0.6
UBFD1O14562 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.78■□□□□ 0.6
UBFD1O14562 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.78■□□□□ 0.6
UBFD1O14562 YBX1P10-201ENST00000444752 975 ntBASIC18.78■□□□□ 0.6
UBFD1O14562 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.78■□□□□ 0.6
UBFD1O14562 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.78■□□□□ 0.6
UBFD1O14562 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.78■□□□□ 0.6
UBFD1O14562 AC098934.4-201ENST00000564127 592 ntBASIC18.78■□□□□ 0.6
UBFD1O14562 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.78■□□□□ 0.6
UBFD1O14562 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.78■□□□□ 0.6
UBFD1O14562 HLA-B-256ENST00000639848 1089 ntBASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms