Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 NRG1-221ENST00000614767 762 ntTSL 5 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 AL138781.2-201ENST00000617896 1843 ntBASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
CHKB-CPT1BH3BT56 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC10.77□□□□□ -0.68
CHKB-CPT1BH3BT56 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
CHKB-CPT1BH3BT56 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.68
CHKB-CPT1BH3BT56 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
CHKB-CPT1BH3BT56 AC125437.2-201ENST00000625180 2167 ntBASIC10.77□□□□□ -0.68
CHKB-CPT1BH3BT56 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC10.77□□□□□ -0.68
CHKB-CPT1BH3BT56 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
CHKB-CPT1BH3BT56 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
CHKB-CPT1BH3BT56 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
CHKB-CPT1BH3BT56 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC10.77□□□□□ -0.68
CHKB-CPT1BH3BT56 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC10.77□□□□□ -0.68
CHKB-CPT1BH3BT56 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC10.77□□□□□ -0.68
CHKB-CPT1BH3BT56 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
CHKB-CPT1BH3BT56 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
CHKB-CPT1BH3BT56 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
CHKB-CPT1BH3BT56 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
CHKB-CPT1BH3BT56 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC10.77□□□□□ -0.69
CHKB-CPT1BH3BT56 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC10.77□□□□□ -0.69
CHKB-CPT1BH3BT56 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC10.77□□□□□ -0.69
CHKB-CPT1BH3BT56 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms