Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
COL9A1P20849 CBFA2T2-209ENST00000492345 7803 ntTSL 5 BASIC7.37□□□□□ -1.23
COL9A1P20849 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 MUSK-205ENST00000374448 2754 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
COL9A1P20849 FRMD7-203ENST00000464296 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 CPM-202ENST00000546373 2116 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC7.37□□□□□ -1.23
COL9A1P20849 PHF21A-201ENST00000323180 3675 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 TMEM209-206ENST00000473456 1961 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 RFX5-201ENST00000290524 3576 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 CDC42SE1-201ENST00000357235 3045 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 AMOT-202ENST00000371958 2462 ntAPPRIS ALT2 TSL 5 BASIC7.37□□□□□ -1.23
COL9A1P20849 CARD8-217ENST00000520753 3041 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 TCP11X1-202ENST00000622971 1372 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 DIO2-201ENST00000422005 6272 ntTSL 5 BASIC7.37□□□□□ -1.23
COL9A1P20849 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 DNAH10-201ENST00000409039 14473 ntAPPRIS ALT2 TSL 5 BASIC7.37□□□□□ -1.23
COL9A1P20849 CDC40-203ENST00000368932 3933 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
COL9A1P20849 AC011460.1-201ENST00000636268 1834 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 LTBP1-201ENST00000402934 4948 ntAPPRIS ALT2 TSL 5 BASIC7.37□□□□□ -1.23
COL9A1P20849 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 RNU6-28P-201ENST00000362378 107 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 RNU5A-8P-201ENST00000364102 114 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 RNU6-280P-201ENST00000364145 104 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 Y_RNA.214-201ENST00000364201 112 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 Y_RNA.416-201ENST00000384014 113 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 RNU6-190P-201ENST00000384154 102 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 AC008280.1-201ENST00000418851 412 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 SETP5-201ENST00000437270 562 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 AC011816.1-201ENST00000441346 546 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 COX4I1P2-201ENST00000447446 547 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 AC243772.1-201ENST00000451620 410 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 HMGB3P21-201ENST00000452483 547 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC7.37□□□□□ -1.23
COL9A1P20849 FTH1P21-201ENST00000512179 511 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 RNU2-10P-201ENST00000516375 211 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 SCARNA16.2-201ENST00000516520 172 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 OR52K3P-201ENST00000531655 943 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC7.37□□□□□ -1.23
COL9A1P20849 MIR4470-201ENST00000583453 72 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 AC087894.3-201ENST00000623682 349 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 LNX1-202ENST00000306888 3757 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 SH3YL1-202ENST00000402632 3151 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 RXFP1-207ENST00000470033 2175 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 NPIPB9-202ENST00000550983 2123 ntAPPRIS P2 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 CASC19-204ENST00000641001 2055 ntBASIC7.37□□□□□ -1.23
COL9A1P20849 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC7.37□□□□□ -1.23
COL9A1P20849 PALM2-AKAP2-201ENST00000302798 4718 ntTSL 2 BASIC7.37□□□□□ -1.23
COL9A1P20849 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC7.37□□□□□ -1.23
COL9A1P20849 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC7.37□□□□□ -1.23
COL9A1P20849 SHROOM4-202ENST00000376020 9556 ntAPPRIS P1 TSL 2 BASIC7.37□□□□□ -1.23
COL9A1P20849 FER-202ENST00000438717 1531 ntTSL 2 BASIC7.37□□□□□ -1.23
COL9A1P20849 SP140-203ENST00000392045 3246 ntAPPRIS P3 TSL 2 BASIC7.37□□□□□ -1.23
COL9A1P20849 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL9A1P20849 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC7.36□□□□□ -1.23
COL9A1P20849 CNTN4-201ENST00000397459 2322 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL9A1P20849 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL9A1P20849 MAP4K4-212ENST00000456652 3855 ntTSL 5 BASIC7.36□□□□□ -1.23
COL9A1P20849 LINC00559-201ENST00000569476 3867 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL9A1P20849 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL9A1P20849 PSEN1-205ENST00000406768 4062 ntTSL 2 BASIC7.36□□□□□ -1.23
COL9A1P20849 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC7.36□□□□□ -1.23
COL9A1P20849 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC7.36□□□□□ -1.23
COL9A1P20849 LINC01630-208ENST00000635680 4363 ntTSL 5 BASIC7.36□□□□□ -1.23
COL9A1P20849 NDRG3-203ENST00000373773 2098 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL9A1P20849 CDH8-203ENST00000577390 9721 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL9A1P20849 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC7.36□□□□□ -1.23
COL9A1P20849 PPIAP26-201ENST00000377951 522 ntBASIC7.36□□□□□ -1.23
COL9A1P20849 ARF4P3-201ENST00000397387 509 ntBASIC7.36□□□□□ -1.23
COL9A1P20849 PPIAP9-201ENST00000403866 498 ntBASIC7.36□□□□□ -1.23
COL9A1P20849 RNU4-46P-201ENST00000410818 138 ntBASIC7.36□□□□□ -1.23
COL9A1P20849 VWC2L-IT1-201ENST00000416430 467 ntTSL 3 BASIC7.36□□□□□ -1.23
COL9A1P20849 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL9A1P20849 BX284632.2-201ENST00000421091 399 ntBASIC7.36□□□□□ -1.23
COL9A1P20849 GAPDHP37-201ENST00000442317 968 ntBASIC7.36□□□□□ -1.23
COL9A1P20849 AL359955.2-201ENST00000445380 353 ntBASIC7.36□□□□□ -1.23
COL9A1P20849 IGKV1OR2-2-201ENST00000451163 355 ntBASIC7.36□□□□□ -1.23
COL9A1P20849 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC7.36□□□□□ -1.23
COL9A1P20849 AC245028.2-201ENST00000458673 253 ntBASIC7.36□□□□□ -1.23
COL9A1P20849 AC093852.1-201ENST00000503587 266 ntBASIC7.36□□□□□ -1.23
COL9A1P20849 AC022447.4-201ENST00000504053 364 ntBASIC7.36□□□□□ -1.23
COL9A1P20849 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC7.36□□□□□ -1.23
COL9A1P20849 RNU5B-3P-201ENST00000516601 115 ntBASIC7.36□□□□□ -1.23
COL9A1P20849 AP001922.4-201ENST00000526967 290 ntBASIC7.36□□□□□ -1.23
COL9A1P20849 EIF4A2P5-201ENST00000529914 499 ntBASIC7.36□□□□□ -1.23
COL9A1P20849 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC7.36□□□□□ -1.23
COL9A1P20849 AC023908.2-201ENST00000558616 318 ntTSL 3 BASIC7.36□□□□□ -1.23
COL9A1P20849 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC7.36□□□□□ -1.23
COL9A1P20849 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC7.36□□□□□ -1.23
COL9A1P20849 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC7.36□□□□□ -1.23
COL9A1P20849 MAPK10-242ENST00000639242 3088 ntAPPRIS P2 TSL 5 BASIC7.36□□□□□ -1.23
COL9A1P20849 NMD3-201ENST00000351193 3049 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL9A1P20849 PARP4-201ENST00000381989 5474 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL9A1P20849 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL9A1P20849 LPAR1-202ENST00000374430 2993 ntAPPRIS P2 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL9A1P20849 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC7.36□□□□□ -1.23
COL9A1P20849 GPR161-201ENST00000271357 7806 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL9A1P20849 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL9A1P20849 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC7.36□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms