RNA–Protein interactions for RNA: ENST00000399002.6

SPTLC3-201, Transcript of serine palmitoyltransferase long chain base subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC3, Length 6,169 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC3-201ENST00000399002 DCAF8L2P0C7V8 631 aa13.93□□□□□ -0.18
SPTLC3-201ENST00000399002 NISCHQ9Y2I1 1504 aa13.86□□□□□ -0.19
SPTLC3-201ENST00000399002 PELP1Q8IZL8 1130 aaKnown RBP13.4□□□□□ -0.26
SPTLC3-201ENST00000399002 SUPT5HO00267 1087 aaKnown RBP13.36□□□□□ -0.27
SPTLC3-201ENST00000399002 SHROOM4Q9ULL8 1493 aa13.1□□□□□ -0.31
SPTLC3-201ENST00000399002 APLP2Q06481 763 aa13.07□□□□□ -0.32
SPTLC3-201ENST00000399002 FAM9AQ8IZU1 332 aaPredicted RBP13□□□□□ -0.33
SPTLC3-201ENST00000399002 ZEB1P37275 1124 aaPredicted RBP12.91□□□□□ -0.34
SPTLC3-201ENST00000399002 CCER1Q8TC90 406 aaPredicted RBP12.77□□□□□ -0.36
SPTLC3-201ENST00000399002 CENPBP07199 599 aaPredicted RBP12.77□□□□□ -0.37
SPTLC3-201ENST00000399002 EHMT2Q96KQ7 1210 aa12.7□□□□□ -0.38
SPTLC3-201ENST00000399002 MYT1Q01538 1121 aa12.69□□□□□ -0.38
SPTLC3-201ENST00000399002 ERICH6Q7L0X2 663 aa12.65□□□□□ -0.38
SPTLC3-201ENST00000399002 PCGF6Q9BYE7 350 aa12.58□□□□□ -0.4
SPTLC3-201ENST00000399002 TRIM41Q8WV44 630 aa12.58□□□□□ -0.4
SPTLC3-201ENST00000399002 NEFLP07196 543 aa12.47□□□□□ -0.41
SPTLC3-201ENST00000399002 UBTFP17480 764 aaKnown RBP12.38□□□□□ -0.43
SPTLC3-201ENST00000399002 TTBK1Q5TCY1 1321 aaPredicted RBP12.36□□□□□ -0.43
SPTLC3-201ENST00000399002 TRIM26Q12899 539 aaPredicted RBP12.32□□□□□ -0.44
SPTLC3-201ENST00000399002 ATP1B4Q9UN42 357 aaPredicted RBP12.3□□□□□ -0.44
SPTLC3-201ENST00000399002 RANGAP1P46060 587 aaPredicted RBP12.24□□□□□ -0.45
SPTLC3-201ENST00000399002 HRCP23327 699 aa12.13□□□□□ -0.47
SPTLC3-201ENST00000399002 YTHDC1Q96MU7 727 aaKnown RBP12.11□□□□□ -0.47
SPTLC3-201ENST00000399002 DAXXQ9UER7 740 aaPredicted RBP12.11□□□□□ -0.47
SPTLC3-201ENST00000399002 CHIC1Q5VXU3 224 aa11.97□□□□□ -0.49
SPTLC3-201ENST00000399002 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.9□□□□□ -0.5
SPTLC3-201ENST00000399002 HNRNPUL2Q1KMD3 747 aaKnown RBP11.9□□□□□ -0.5
SPTLC3-201ENST00000399002 MYT1LQ9UL68 1186 aa11.88□□□□□ -0.51
SPTLC3-201ENST00000399002 PPARGC1BQ86YN6 1023 aaKnown RBP11.86□□□□□ -0.51
SPTLC3-201ENST00000399002 ITGAEP38570 1179 aa11.85□□□□□ -0.51
SPTLC3-201ENST00000399002 RTL5Q5HYW3 569 aaPredicted RBP11.84□□□□□ -0.51
SPTLC3-201ENST00000399002 ZNF316A6NFI3 1004 aaPredicted RBP11.83□□□□□ -0.52
SPTLC3-201ENST00000399002 POLR3GLQ9BT43 218 aa11.82□□□□□ -0.52
SPTLC3-201ENST00000399002 DIEXFQ68CQ4 756 aaKnown RBP11.82□□□□□ -0.52
SPTLC3-201ENST00000399002 LOC105371045A0A1W2PR82 267 aa11.78□□□□□ -0.52
SPTLC3-201ENST00000399002 CLSPNQ9HAW4 1339 aa11.72□□□□□ -0.53
SPTLC3-201ENST00000399002 FAM50AQ14320 339 aaKnown RBP11.72□□□□□ -0.53
SPTLC3-201ENST00000399002 ANP32CO43423 234 aa11.7□□□□□ -0.54
SPTLC3-201ENST00000399002 TRIM52Q96A61 297 aa11.68□□□□□ -0.54
SPTLC3-201ENST00000399002 CDK11AQ9UQ88 783 aaPredicted RBP11.66□□□□□ -0.54
SPTLC3-201ENST00000399002 SLC4A1APQ9BWU0 796 aaKnown RBP11.65□□□□□ -0.54
SPTLC3-201ENST00000399002 ABCC9O60706 1549 aa11.62□□□□□ -0.55
SPTLC3-201ENST00000399002 CCDC180Q9P1Z9 1646 aa11.62□□□□□ -0.55
SPTLC3-201ENST00000399002 ZBTB47Q9UFB7 747 aaPredicted RBP11.61□□□□□ -0.55
SPTLC3-201ENST00000399002 DCAF1Q9Y4B6 1507 aa11.58□□□□□ -0.56
SPTLC3-201ENST00000399002 NEUROD1Q13562 356 aa11.55□□□□□ -0.56
SPTLC3-201ENST00000399002 ZCCHC6Q5VYS8 1495 aaKnown RBP11.53□□□□□ -0.56
SPTLC3-201ENST00000399002 NEFMP07197 916 aa11.53□□□□□ -0.56
SPTLC3-201ENST00000399002 GTF3C3Q9Y5Q9 886 aa11.5□□□□□ -0.57
SPTLC3-201ENST00000399002 CANXP27824 592 aaKnown RBP11.49□□□□□ -0.57
SPTLC3-201ENST00000399002 CNGB1Q14028 1251 aaPredicted RBP11.49□□□□□ -0.57
SPTLC3-201ENST00000399002 ANP32AP39687 249 aaKnown RBP11.49□□□□□ -0.57
SPTLC3-201ENST00000399002 CSRNP3Q8WYN3 585 aa11.49□□□□□ -0.57
SPTLC3-201ENST00000399002 ACIN1Q9UKV3 1341 aaKnown RBP11.46□□□□□ -0.57
SPTLC3-201ENST00000399002 PABPN1Q86U42 306 aaKnown RBP eCLIP11.46□□□□□ -0.58
SPTLC3-201ENST00000399002 SCRIBQ14160 1630 aa11.44□□□□□ -0.58
SPTLC3-201ENST00000399002 ZNF326Q5BKZ1 582 aaKnown RBP11.41□□□□□ -0.58
SPTLC3-201ENST00000399002 TONSLQ96HA7 1378 aa11.39□□□□□ -0.59
SPTLC3-201ENST00000399002 BCANQ96GW7 911 aa11.38□□□□□ -0.59
SPTLC3-201ENST00000399002 ANP32BQ92688 251 aaKnown RBP11.36□□□□□ -0.59
SPTLC3-201ENST00000399002 EEA1Q15075 1411 aa11.35□□□□□ -0.59
SPTLC3-201ENST00000399002 UPF2Q9HAU5 1272 aaKnown RBP11.33□□□□□ -0.6
SPTLC3-201ENST00000399002 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.32□□□□□ -0.6
SPTLC3-201ENST00000399002 FBLN2P98095 1184 aa11.3□□□□□ -0.6
SPTLC3-201ENST00000399002 RB1CC1Q8TDY2 1594 aa11.3□□□□□ -0.6
SPTLC3-201ENST00000399002 GOLGA3Q08378 1498 aa11.24□□□□□ -0.61
SPTLC3-201ENST00000399002 RSF1Q96T23 1441 aaPredicted RBP11.24□□□□□ -0.61
SPTLC3-201ENST00000399002 ZNF777Q9ULD5 760 aaPredicted RBP11.24□□□□□ -0.61
SPTLC3-201ENST00000399002 ESF1Q9H501 851 aaKnown RBP11.23□□□□□ -0.61
SPTLC3-201ENST00000399002 P3H3Q8IVL6 736 aa11.22□□□□□ -0.61
SPTLC3-201ENST00000399002 GLIPR1L2Q4G1C9 344 aa11.22□□□□□ -0.61
SPTLC3-201ENST00000399002 EIF5BO60841 1220 aaKnown RBP11.21□□□□□ -0.61
SPTLC3-201ENST00000399002 FKBP8Q14318 412 aa11.21□□□□□ -0.61
SPTLC3-201ENST00000399002 SLC24A1O60721 1099 aa11.21□□□□□ -0.61
SPTLC3-201ENST00000399002 NACADO15069 1562 aa11.21□□□□□ -0.62
SPTLC3-201ENST00000399002 HSP90AA1P07900 732 aaKnown RBP11.2□□□□□ -0.62
SPTLC3-201ENST00000399002 CLIP1P30622 1438 aa11.18□□□□□ -0.62
SPTLC3-201ENST00000399002 HNRNPUQ00839 825 aaKnown RBP eCLIP11.18□□□□□ -0.62
SPTLC3-201ENST00000399002 WDR43Q15061 677 aaKnown RBP eCLIP11.18□□□□□ -0.62
SPTLC3-201ENST00000399002 DDRGK1Q96HY6 314 aa11.17□□□□□ -0.62
SPTLC3-201ENST00000399002 NPM2Q86SE8 214 aaKnown RBP11.17□□□□□ -0.62
SPTLC3-201ENST00000399002 NPM1P06748 294 aaKnown RBP eCLIP11.17□□□□□ -0.62
SPTLC3-201ENST00000399002 MTUS2Q5JR59 1369 aa11.16□□□□□ -0.62
SPTLC3-201ENST00000399002 STAG3Q9UJ98 1225 aa11.16□□□□□ -0.62
SPTLC3-201ENST00000399002 ANP32EQ9BTT0 268 aa11.15□□□□□ -0.62
SPTLC3-201ENST00000399002 TMC1Q8TDI8 760 aa11.15□□□□□ -0.63
SPTLC3-201ENST00000399002 CCDC136Q96JN2 1154 aa11.13□□□□□ -0.63
SPTLC3-201ENST00000399002 CEP164Q9UPV0 1460 aa11.12□□□□□ -0.63
SPTLC3-201ENST00000399002 TSPY4P0CV99 314 aa11.12□□□□□ -0.63
SPTLC3-201ENST00000399002 TSPY10P0CW01 314 aa11.12□□□□□ -0.63
SPTLC3-201ENST00000399002 MYH16Q9H6N6 1097 aa11.12□□□□□ -0.63
SPTLC3-201ENST00000399002 FAM9BQ8IZU0 186 aa11.1□□□□□ -0.63
SPTLC3-201ENST00000399002 DDX10Q13206 875 aaKnown RBP11.1□□□□□ -0.63
SPTLC3-201ENST00000399002 BECN1Q14457 450 aa11.1□□□□□ -0.63
SPTLC3-201ENST00000399002 EIF4G2P78344 907 aaKnown RBP eCLIP11.09□□□□□ -0.63
SPTLC3-201ENST00000399002 ARID3CA6NKF2 412 aa11.09□□□□□ -0.63
SPTLC3-201ENST00000399002 CEP162Q5TB80 1403 aa11.08□□□□□ -0.63
SPTLC3-201ENST00000399002 CDCA8Q53HL2 280 aa11.08□□□□□ -0.64
SPTLC3-201ENST00000399002 TNIKQ9UKE5 1360 aa11.08□□□□□ -0.64
SPTLC3-201ENST00000399002 MRS2Q9HD23 443 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms