Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 AP000525.1-201ENST00000608286 694 ntBASIC20.57■□□□□ 0.88
CDH9Q9ULB4 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH9Q9ULB4 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 AC011298.2-201ENST00000617989 482 ntBASIC20.56■□□□□ 0.88
CDH9Q9ULB4 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 LINC01465-201ENST00000408887 1940 ntBASIC20.56■□□□□ 0.88
CDH9Q9ULB4 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.56■□□□□ 0.88
CDH9Q9ULB4 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 AC087499.1-201ENST00000418141 1075 ntBASIC20.55■□□□□ 0.88
CDH9Q9ULB4 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.55■□□□□ 0.88
CDH9Q9ULB4 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 MIR1238-201ENST00000408483 83 ntBASIC20.54■□□□□ 0.88
CDH9Q9ULB4 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 AC008040.2-201ENST00000461049 708 ntBASIC20.54■□□□□ 0.88
CDH9Q9ULB4 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 FITM1-202ENST00000559294 800 ntBASIC20.54■□□□□ 0.88
CDH9Q9ULB4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.54■□□□□ 0.88
CDH9Q9ULB4 AP000692.2-201ENST00000608391 879 ntBASIC20.54■□□□□ 0.88
CDH9Q9ULB4 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH9Q9ULB4 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms