Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MTDHP1-201ENST00000605323 784 ntBASIC20.87■□□□□ 0.93
SIX2Q9NPC8 AC069544.1-201ENST00000609399 999 ntBASIC20.87■□□□□ 0.93
SIX2Q9NPC8 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 AC004408.2-201ENST00000623613 2777 ntBASIC20.87■□□□□ 0.93
SIX2Q9NPC8 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 KRT18P6-201ENST00000555540 1265 ntBASIC20.86■□□□□ 0.93
SIX2Q9NPC8 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SIX2Q9NPC8 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 AC093503.3-201ENST00000624917 2352 ntBASIC20.85■□□□□ 0.93
SIX2Q9NPC8 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SIX2Q9NPC8 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.84■□□□□ 0.93
SIX2Q9NPC8 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms