Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 AC130371.2-201ENST00000619443 611 ntBASIC21.08■□□□□ 0.97
CDT1Q9H211 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDT1Q9H211 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.96
CDT1Q9H211 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.96
CDT1Q9H211 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDT1Q9H211 TREX1-205ENST00000625293 1783 ntBASIC21.08■□□□□ 0.96
CDT1Q9H211 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDT1Q9H211 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CDT1Q9H211 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDT1Q9H211 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.07■□□□□ 0.96
CDT1Q9H211 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CDT1Q9H211 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDT1Q9H211 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDT1Q9H211 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDT1Q9H211 PWWP2AP1-201ENST00000429776 2273 ntBASIC21.07■□□□□ 0.96
CDT1Q9H211 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDT1Q9H211 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.07■□□□□ 0.96
CDT1Q9H211 KRT8P9-201ENST00000558927 1449 ntBASIC21.07■□□□□ 0.96
CDT1Q9H211 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.07■□□□□ 0.96
CDT1Q9H211 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDT1Q9H211 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDT1Q9H211 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDT1Q9H211 MIR1238-201ENST00000408483 83 ntBASIC21.07■□□□□ 0.96
CDT1Q9H211 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDT1Q9H211 AC091390.4-202ENST00000476426 537 ntBASIC21.07■□□□□ 0.96
CDT1Q9H211 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.07■□□□□ 0.96
CDT1Q9H211 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.07■□□□□ 0.96
CDT1Q9H211 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC21.07■□□□□ 0.96
CDT1Q9H211 DGCR10-201ENST00000609839 495 ntBASIC21.07■□□□□ 0.96
CDT1Q9H211 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
CDT1Q9H211 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDT1Q9H211 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDT1Q9H211 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDT1Q9H211 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDT1Q9H211 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CDT1Q9H211 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDT1Q9H211 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.07■□□□□ 0.96
CDT1Q9H211 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.06■□□□□ 0.96
CDT1Q9H211 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDT1Q9H211 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.06■□□□□ 0.96
CDT1Q9H211 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDT1Q9H211 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDT1Q9H211 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDT1Q9H211 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDT1Q9H211 MMP23A-201ENST00000234610 1017 ntBASIC21.06■□□□□ 0.96
CDT1Q9H211 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDT1Q9H211 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
CDT1Q9H211 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CDT1Q9H211 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDT1Q9H211 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDT1Q9H211 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.06■□□□□ 0.96
CDT1Q9H211 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CDT1Q9H211 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDT1Q9H211 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.06■□□□□ 0.96
CDT1Q9H211 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CDT1Q9H211 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDT1Q9H211 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
CDT1Q9H211 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.05■□□□□ 0.96
CDT1Q9H211 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.05■□□□□ 0.96
CDT1Q9H211 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.05■□□□□ 0.96
CDT1Q9H211 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CDT1Q9H211 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDT1Q9H211 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDT1Q9H211 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.05■□□□□ 0.96
CDT1Q9H211 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.05■□□□□ 0.96
CDT1Q9H211 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
CDT1Q9H211 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDT1Q9H211 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDT1Q9H211 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDT1Q9H211 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
CDT1Q9H211 AC211429.1-201ENST00000415277 523 ntBASIC21.05■□□□□ 0.96
CDT1Q9H211 FITM1-202ENST00000559294 800 ntBASIC21.05■□□□□ 0.96
CDT1Q9H211 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.05■□□□□ 0.96
CDT1Q9H211 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.05■□□□□ 0.96
CDT1Q9H211 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDT1Q9H211 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.05■□□□□ 0.96
CDT1Q9H211 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDT1Q9H211 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDT1Q9H211 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDT1Q9H211 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDT1Q9H211 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.05■□□□□ 0.96
CDT1Q9H211 AC104417.2-201ENST00000562989 1793 ntBASIC21.05■□□□□ 0.96
CDT1Q9H211 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.05■□□□□ 0.96
CDT1Q9H211 KRT8P41-201ENST00000533985 1514 ntBASIC21.04■□□□□ 0.96
CDT1Q9H211 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
CDT1Q9H211 ZNF815P-204ENST00000434898 1737 ntBASIC21.04■□□□□ 0.96
CDT1Q9H211 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CDT1Q9H211 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDT1Q9H211 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.04■□□□□ 0.96
CDT1Q9H211 AP000692.2-201ENST00000608391 879 ntBASIC21.04■□□□□ 0.96
CDT1Q9H211 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC21.04■□□□□ 0.96
CDT1Q9H211 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.04■□□□□ 0.96
CDT1Q9H211 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.04■□□□□ 0.96
CDT1Q9H211 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.04■□□□□ 0.96
CDT1Q9H211 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.04■□□□□ 0.96
CDT1Q9H211 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDT1Q9H211 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CDT1Q9H211 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.04■□□□□ 0.96
CDT1Q9H211 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDT1Q9H211 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms