Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.28■■□□□ 1
TRAIPQ9BWF2 LINC01568-207ENST00000641790 1380 ntBASIC21.28■■□□□ 1
TRAIPQ9BWF2 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.28■■□□□ 1
TRAIPQ9BWF2 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
TRAIPQ9BWF2 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
TRAIPQ9BWF2 AL390955.1-201ENST00000428694 934 ntBASIC21.28■■□□□ 1
TRAIPQ9BWF2 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC21.28■■□□□ 1
TRAIPQ9BWF2 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC21.28■■□□□ 1
TRAIPQ9BWF2 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.28■■□□□ 1
TRAIPQ9BWF2 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC21.28■■□□□ 1
TRAIPQ9BWF2 AC005363.2-201ENST00000618631 242 ntBASIC21.28■■□□□ 1
TRAIPQ9BWF2 AC130371.2-201ENST00000619443 611 ntBASIC21.28■■□□□ 1
TRAIPQ9BWF2 AC092865.7-201ENST00000641832 219 ntBASIC21.28■■□□□ 1
TRAIPQ9BWF2 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
TRAIPQ9BWF2 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.28■■□□□ 1
TRAIPQ9BWF2 KRT18P22-201ENST00000402024 1347 ntBASIC21.28■■□□□ 1
TRAIPQ9BWF2 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.28■■□□□ 1
TRAIPQ9BWF2 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC21.27■■□□□ 1
TRAIPQ9BWF2 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRAIPQ9BWF2 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRAIPQ9BWF2 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.27■■□□□ 1
TRAIPQ9BWF2 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRAIPQ9BWF2 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
TRAIPQ9BWF2 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
TRAIPQ9BWF2 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.27■■□□□ 1
TRAIPQ9BWF2 NME1-207ENST00000480143 964 ntTSL 2 BASIC21.27■■□□□ 1
TRAIPQ9BWF2 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.27■■□□□ 1
TRAIPQ9BWF2 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRAIPQ9BWF2 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.27■■□□□ 1
TRAIPQ9BWF2 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRAIPQ9BWF2 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.27■□□□□ 0.99
TRAIPQ9BWF2 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
TRAIPQ9BWF2 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.27■□□□□ 0.99
TRAIPQ9BWF2 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.27■□□□□ 0.99
TRAIPQ9BWF2 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
TRAIPQ9BWF2 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
TRAIPQ9BWF2 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.26■□□□□ 0.99
TRAIPQ9BWF2 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 KRT8P8-201ENST00000434750 1448 ntBASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 AL162377.1-201ENST00000618844 1793 ntBASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAIPQ9BWF2 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms